Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   IGS65_RS07550 Genome accession   NZ_CP066294
Coordinates   1525685..1526776 (+) Length   363 a.a.
NCBI ID   WP_002268681.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1520685..1531776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS07525 (IGS65_007525) pgsA 1521093..1521635 (-) 543 WP_002262451.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IGS65_RS07530 (IGS65_007530) - 1521647..1522624 (-) 978 WP_002270375.1 helix-turn-helix domain-containing protein -
  IGS65_RS07535 (IGS65_007535) - 1522697..1523989 (-) 1293 WP_024783908.1 pitrilysin family protein -
  IGS65_RS07540 (IGS65_007540) - 1523991..1525238 (-) 1248 WP_002306585.1 pitrilysin family protein -
  IGS65_RS07545 (IGS65_007545) yaaA 1525317..1525682 (+) 366 WP_002351618.1 S4 domain-containing protein YaaA -
  IGS65_RS07550 (IGS65_007550) recF 1525685..1526776 (+) 1092 WP_002268681.1 DNA replication/repair protein RecF Machinery gene
  IGS65_RS07555 (IGS65_007555) guaB 1526938..1528419 (-) 1482 WP_002262457.1 IMP dehydrogenase -
  IGS65_RS07560 (IGS65_007560) trpS 1528576..1529598 (-) 1023 WP_002264241.1 tryptophan--tRNA ligase -
  IGS65_RS07565 (IGS65_007565) - 1530033..1531652 (+) 1620 WP_192072443.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 42015.26 Da        Isoelectric Point: 9.8334

>NTDB_id=454618 IGS65_RS07550 WP_002268681.1 1525685..1526776(+) (recF) [Streptococcus mutans strain 27-3]
MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQFGQKELNVSGLLNRVNGK
IPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQR
NAYLKSEKKVDTDFLFVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDHKKNIRDNFLN
LLQKNRQGDIFKKNTSVGPHRDDLAFFINQMNASFGSQGQHRSLILSLKLAEIELIKTVTGDYPILLLDDVMSELDNYRQ
IKLLEGIKDNVQTFITTTSLEHLQQLPKKLKLFTINQGKVISE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=454618 IGS65_RS07550 WP_002268681.1 1525685..1526776(+) (recF) [Streptococcus mutans strain 27-3]
ATGTGGATAGAAAAAATTAATTTAAAACATTATCGCAATTATACAGCCATTGAATCTGAATTTTCCCAAAGTCTTAATGT
TTTTGTGGGACAAAATGCTCAAGGAAAAACCAATTTCCTAGAGGCTATTTATTTTTTATCTTTAACCCGCAGTCATCGAA
CACGATCTGACAAAGAACTTATTCAATTTGGTCAAAAAGAATTAAATGTTTCTGGCCTTCTTAATCGTGTCAATGGCAAA
ATTCCTCTGGAAATCAACTTATCTAATAAAGGCCGAACAACAAAAATAAATTATCTCAAACAACCTAAACTTTCAGACTA
TATTGGAACAATGACTGTTGTTCTCTTTGCTCCAGAAGATCTTCAACTAATAAAAGGCTCCCCAAGTCTCAGAAGAAAGT
TTATTGACATTGATTTAGGACAAATCAAGCCTATTTACTTATCTGATTTATCAAATTATAATCATGTTCTTAAACAACGA
AACGCCTATTTAAAATCAGAGAAGAAGGTTGATACTGATTTTCTTTTCGTTCTAGATGAACAATTGGTAGATTATGGTAG
TAAGGTTATTGAGCATCGCCTTGATTTTATTCAAAATTTAACTAAAGAAGCTGATAAATATCATTTCTCTATTTCAAATC
AACAGGAACATTTAAAAATTTCCTACCTTTCTTCTGTTAAATTTGATCATAAAAAAAATATTCGTGATAACTTTTTAAAC
CTGCTACAAAAAAATCGGCAGGGTGATATTTTCAAAAAGAACACCAGTGTTGGTCCACACCGCGATGATTTAGCCTTTTT
CATCAATCAAATGAACGCTAGCTTTGGTAGTCAAGGACAACATCGCAGCCTTATTTTATCTTTAAAGCTGGCTGAGATTG
AACTTATAAAAACAGTCACTGGGGATTATCCTATTCTCTTGTTAGATGATGTCATGAGTGAACTTGATAATTATAGACAA
ATCAAACTTTTAGAGGGCATCAAAGATAATGTTCAGACCTTTATAACAACAACTAGCCTTGAACATCTTCAACAACTCCC
TAAGAAACTAAAGTTATTTACTATCAACCAAGGAAAAGTGATATCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65

99.174

0.645
  recF Bacillus subtilis subsp. subtilis str. 168

43.902

100

0.446