Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   H9K57_RS02580 Genome accession   NZ_CP066246
Coordinates   557760..558488 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain DHO76     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 552760..563488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K57_RS02555 (H9K57_02555) trpR 553147..553458 (+) 312 WP_020904197.1 trp operon repressor -
  H9K57_RS02560 (H9K57_02560) yjjX 553507..554040 (-) 534 WP_023585665.1 inosine/xanthosine triphosphatase -
  H9K57_RS02565 (H9K57_02565) pheA 554065..555243 (-) 1179 WP_005468591.1 prephenate dehydratase -
  H9K57_RS02570 (H9K57_02570) raiA 555487..555813 (-) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  H9K57_RS02575 (H9K57_02575) - 556144..557625 (-) 1482 WP_345892795.1 lytic transglycosylase F -
  H9K57_RS02580 (H9K57_02580) comL 557760..558488 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  H9K57_RS02585 (H9K57_02585) rluD 558625..559602 (+) 978 WP_193239885.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  H9K57_RS02590 (H9K57_02590) pgeF 559604..560332 (+) 729 WP_248377711.1 peptidoglycan editing factor PgeF -
  H9K57_RS02595 (H9K57_02595) clpC 560480..563053 (+) 2574 WP_025502266.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=454434 H9K57_RS02580 WP_005460312.1 557760..558488(-) (comL) [Vibrio parahaemolyticus strain DHO76]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=454434 H9K57_RS02580 WP_005460312.1 557760..558488(-) (comL) [Vibrio parahaemolyticus strain DHO76]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGTAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCACTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405