Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JCR16_RS17965 Genome accession   NZ_CP066237
Coordinates   3724694..3725329 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii strain G20AB007     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3719694..3730329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR16_RS17945 (JCR16_17945) - 3719771..3720586 (+) 816 WP_000011163.1 DsbC family protein -
  JCR16_RS17950 (JCR16_17950) - 3720831..3722132 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  JCR16_RS17955 (JCR16_17955) thrC 3722188..3723327 (+) 1140 WP_000063593.1 threonine synthase -
  JCR16_RS17960 (JCR16_17960) pbpG 3723435..3724481 (-) 1047 WP_031946417.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  JCR16_RS17965 (JCR16_17965) letA 3724694..3725329 (+) 636 WP_000633799.1 response regulator Regulator
  JCR16_RS17970 (JCR16_17970) pilS 3725340..3726908 (+) 1569 WP_033915466.1 PAS domain-containing sensor histidine kinase Regulator
  JCR16_RS17975 (JCR16_17975) - 3726933..3728354 (+) 1422 WP_017816292.1 sigma-54 dependent transcriptional regulator -
  JCR16_RS17980 (JCR16_17980) - 3728358..3729542 (-) 1185 WP_000939107.1 S41 family peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=454316 JCR16_RS17965 WP_000633799.1 3724694..3725329(+) (letA) [Acinetobacter baumannii strain G20AB007]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=454316 JCR16_RS17965 WP_000633799.1 3724694..3725329(+) (letA) [Acinetobacter baumannii strain G20AB007]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAATATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTCGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCATTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGTGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGTGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55
  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55