Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   I33_RS13280 Genome accession   NC_017195
Coordinates   2664823..2665569 (-) Length   248 a.a.
NCBI ID   WP_014477553.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2659823..2670569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS13255 (I33_2851) mreC 2660229..2661101 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  I33_RS13260 (I33_2852) mreB 2661132..2662145 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  I33_RS13265 (I33_2853) radC 2662237..2662932 (-) 696 WP_014477551.1 DNA repair protein RadC -
  I33_RS13270 (I33_2854) maf 2662969..2663538 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  I33_RS13275 (I33_2855) spoIIB 2663691..2664689 (-) 999 WP_014477552.1 stage II sporulation protein SpoIIB -
  I33_RS13280 (I33_2856) comC 2664823..2665569 (-) 747 WP_014477553.1 prepilin peptidase Machinery gene
  I33_RS13285 (I33_2857) folC 2665710..2667002 (-) 1293 WP_014477554.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  I33_RS13290 (I33_2858) valS 2667062..2669704 (-) 2643 WP_041519452.1 valine--tRNA ligase -
  I33_RS13295 (I33_2859) - 2670152..2670343 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26439.97 Da        Isoelectric Point: 9.6311

>NTDB_id=45430 I33_RS13280 WP_014477553.1 2664823..2665569(-) (comC) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPVAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGSAAVLTGRLATRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=45430 I33_RS13280 WP_014477553.1 2664823..2665569(-) (comC) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGCTATCCATTCTTTTTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGTAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACGTCGTTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGTTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTACGGGTCGGCAGCTGTTCTGACTGGTAGACTCGCTA
CAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98

Multiple sequence alignment