Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   A7A1_RS11660 Genome accession   NC_019896
Coordinates   2295092..2295523 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis str. BSP1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2290092..2300523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A1_RS11650 (A7A1_3383) hexA 2291576..2294152 (-) 2577 WP_015252070.1 DNA mismatch repair protein MutS Machinery gene
  A7A1_RS11655 (A7A1_3384) cotE 2294285..2294830 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  A7A1_RS11660 (A7A1_3385) ymcA 2295092..2295523 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  A7A1_RS11665 (A7A1_3386) miaB 2295525..2297054 (-) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  A7A1_RS11670 (A7A1_3387) kbl 2297202..2298380 (-) 1179 WP_015252071.1 glycine C-acetyltransferase -
  A7A1_RS11675 (A7A1_3388) tdh 2298393..2299436 (-) 1044 WP_015252072.1 L-threonine 3-dehydrogenase -
  A7A1_RS11680 (A7A1_3389) spoVS 2299703..2299963 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=45423 A7A1_RS11660 WP_003231834.1 2295092..2295523(-) (ymcA) [Bacillus subtilis subsp. subtilis str. BSP1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=45423 A7A1_RS11660 WP_003231834.1 2295092..2295523(-) (ymcA) [Bacillus subtilis subsp. subtilis str. BSP1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment