Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I33_RS12190 Genome accession   NC_017195
Coordinates   2456575..2457342 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2451575..2462342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS12170 (I33_2607) ppsR 2451750..2452562 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  I33_RS12175 (I33_2608) ccpN 2452588..2453226 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  I33_RS12180 (I33_2609) glyS 2453359..2455398 (-) 2040 WP_014477368.1 glycine--tRNA ligase subunit beta -
  I33_RS12185 (I33_2610) glyQ 2455391..2456278 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  I33_RS12190 (I33_2611) recO 2456575..2457342 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  I33_RS20475 (I33_2612) yqzL 2457379..2457522 (-) 144 WP_003230053.1 YqzL family protein -
  I33_RS12195 (I33_2613) era 2457670..2458575 (-) 906 WP_014477370.1 GTPase Era -
  I33_RS12200 (I33_2614) - 2458556..2458966 (-) 411 WP_003230049.1 cytidine deaminase -
  I33_RS12205 (I33_2615) unpK 2459085..2459456 (-) 372 WP_014477371.1 diacylglycerol kinase family protein -
  I33_RS12210 (I33_2616) ybeY 2459437..2459910 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  I33_RS12215 (I33_2617) pgpH 2459911..2462046 (-) 2136 WP_014477372.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=45422 I33_RS12190 WP_014477369.1 2456575..2457342(-) (recO) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=45422 I33_RS12190 WP_014477369.1 2456575..2457342(-) (recO) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTATTAAGACTCTTTTATTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment