Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   HUO05_RS09980 Genome accession   NZ_CP054700
Coordinates   2158274..2158888 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain GS_MYPK1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2153274..2163888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUO05_RS09960 (HUO05_09960) - 2153558..2154475 (-) 918 WP_025768187.1 ABC transporter ATP-binding protein -
  HUO05_RS09965 (HUO05_09965) - 2154726..2156396 (-) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  HUO05_RS09970 (HUO05_09970) can 2156678..2157346 (+) 669 WP_005379996.1 carbonate dehydratase -
  HUO05_RS09975 (HUO05_09975) hpt 2157424..2157954 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  HUO05_RS09980 (HUO05_09980) opaR 2158274..2158888 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  HUO05_RS09985 (HUO05_09985) lpdA 2159035..2160462 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  HUO05_RS09990 (HUO05_09990) aceF 2160730..2162628 (-) 1899 WP_176311154.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=454015 HUO05_RS09980 WP_005379994.1 2158274..2158888(+) (opaR) [Vibrio alginolyticus strain GS_MYPK1]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=454015 HUO05_RS09980 WP_005379994.1 2158274..2158888(+) (opaR) [Vibrio alginolyticus strain GS_MYPK1]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGATGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGCGGTGAGGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAACTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711