Detailed information NTG0454007

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: JDY60_RS08205
• Genome accession: NZ_CP066172
• Coordinates: 1708514..1709611 (-)
• Length: 365 a.a.
• NCBI ID: WP_000266686.1
• Uniprot ID: -
• Organism: Streptococcus oralis strain SF100
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1703514..1714611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JDY60_RS08190 (JDY60_08190)	-	1703978..1705600 (-)	1623	WP_000958788.1	ATP-binding cassette domain-containing protein	-
JDY60_RS08195 (JDY60_08195)	trpS	1705796..1706824 (+)	1029	WP_000165465.1	tryptophan--tRNA ligase	-
JDY60_RS08200 (JDY60_08200)	guaB	1706984..1708462 (+)	1479	WP_000073416.1	IMP dehydrogenase	-
JDY60_RS08205 (JDY60_08205)	recF	1708514..1709611 (-)	1098	WP_000266686.1	DNA replication/repair protein RecF	Machinery gene
JDY60_RS08210 (JDY60_08210)	yaaA	1709614..1709982 (-)	369	WP_000455876.1	S4 domain-containing protein YaaA	-
JDY60_RS08215 (JDY60_08215)	yfmF	1710143..1711393 (+)	1251	WP_200370613.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
JDY60_RS08220 (JDY60_08220)	yfmH	1711390..1712673 (+)	1284	WP_200370614.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
JDY60_RS08225 (JDY60_08225)	rodZ	1712709..1713530 (+)	822	WP_200370615.1	cytoskeleton protein RodZ	-
JDY60_RS08230 (JDY60_08230)	pgsA	1713541..1714086 (+)	546	WP_000712149.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41984.15 Da
• Isoelectric Point: 9.4716

>NTDB_id=454007 JDY60_RS08205 WP_000266686.1 1708514..1709611(-) (recF) [Streptococcus oralis strain SF100]
MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIHFDNEQLHLSGLLQKKTSS
IPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQR
NTYLKSNQKIDETFLSVLDDQLIEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNFTNEEQLTSSFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITNESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFNIQSGKISVNQN

Nucleotide

• Length: 1098 bp

>NTDB_id=454007 JDY60_RS08205 WP_000266686.1 1708514..1709611(-) (recF) [Streptococcus oralis strain SF100]
ATGTGGCTCCAACATTTAACAATTAAAACCTTTCGAAACTACAAAGAGGCAAAAATTGATTTCAATCCAAAATTAAATGT
CTTTCTAGGTCAAAATGCACAAGGAAAAACCAATATTCTAGAAGCAATCTATTTTTTAGCCTTAACACGTAGTCATCGGA
CTCGTACAGATAAAAATCTCATTCATTTTGATAACGAGCAACTCCATCTTTCTGGCTTGCTACAGAAGAAAACAAGCTCT
ATCCCTCTAGAAATTGATTTAACGCCAAAAGGGCGTGTGACTAAGGTCAATCACTTAAAACAAGCGCGCCTATCAGACTA
CATCGGACATATGAATGTTGTCCTCTTCGCACCTGAAGATCTCCAGCTAATTAAGGGAGCACCTTCTGTCCGTCGAAAAT
TTATAGACATCGAACTGGGACAAATTAAACCAATCTACTTGTCAGACTTGTCAAACTACAACCATATACTCAAGCAGAGA
AATACCTATCTAAAATCCAACCAGAAGATTGATGAAACATTTCTGTCAGTCTTAGATGATCAGTTAATAGAGTATGGTTG
TCGCGTTATAAAGCATCGGATAAAATTCATTAAAGACTTAGAGAAATTTGGCCAAAAAAAACACTTAGAAATTTCAAATA
AATTAGAAGAACTGTCAATATCTTATCAATCATCTGTCAACTTCACTAATGAAGAACAGCTAACAAGTTCCTTTAAAATT
GCTTTAGAGAAAAGCAGATCCAGAGACTTATTTAAAAAGAATACTGGTGTTGGTCCTCATCGAGATGATATTTCTTTTTA
TATCAATGGTATGGACGCTAGTTTTGGAAGCCAAGGTCAACATCGTAGTCTTGTTCTTTCTATCAAACTGGCAGAAATTG
AGCTAATGGAAAGTATTACCAACGAGTCTCCTATACTATTGCTTGATGATGTTATGAGCGAACTTGACAATACACGGCAA
CTAAAATTACTAGAAACCATTTCTCAATCTATCCAAACCTTTATCACAACAACAAGTTTAGACCACTTGCAAAATTTGCC
AGAAAATCTTAGTATCTTCAATATCCAAAGCGGTAAAATTTCTGTAAATCAAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	89.041	100	0.89
recF	Bacillus subtilis subsp. subtilis str. 168	45.109	100	0.455