Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HUN01_RS27265 Genome accession   NZ_CP054698
Coordinates   5806238..5807344 (+) Length   368 a.a.
NCBI ID   WP_181928768.1    Uniprot ID   -
Organism   Nostoc edaphicum CCNP1411     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5801238..5812344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUN01_RS27240 (HUN01_27235) - 5801454..5801969 (-) 516 WP_181928764.1 TIGR02652 family protein -
  HUN01_RS27245 (HUN01_27240) - 5802212..5802739 (+) 528 WP_181928765.1 gamma carbonic anhydrase family protein -
  HUN01_RS27250 (HUN01_27245) - 5803049..5803174 (+) 126 WP_069072075.1 photosystem II protein Y -
  HUN01_RS27255 (HUN01_27250) - 5803369..5804721 (+) 1353 WP_181928766.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  HUN01_RS27260 (HUN01_27255) - 5804798..5806096 (-) 1299 WP_181928767.1 ABC transporter substrate-binding protein -
  HUN01_RS27265 (HUN01_27260) pilM 5806238..5807344 (+) 1107 WP_181928768.1 type IV pilus assembly protein PilM Machinery gene
  HUN01_RS27270 (HUN01_27265) - 5807348..5808124 (+) 777 WP_181928769.1 PilN domain-containing protein -
  HUN01_RS27275 (HUN01_27270) - 5808121..5808888 (+) 768 WP_181928770.1 pilus assembly protein PilO -
  HUN01_RS27280 (HUN01_27275) - 5809094..5811508 (+) 2415 WP_181928771.1 type IV pilus secretin family protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40441.41 Da        Isoelectric Point: 4.4130

>NTDB_id=453979 HUN01_RS27265 WP_181928768.1 5806238..5807344(+) (pilM) [Nostoc edaphicum CCNP1411]
MVKSFNSLFGKSKKGVGIELAPERVNVVQLRKQGQGLKLETFTSVAVPEGVVTDGQITDPAAMAQLIQQALAESKIKTSR
VATGVPGRDSIVRIIPVPTELDDKELREMVLNHEAGLYLPYPREEADVDYQKLDYFIDEDGIEKVHVLLVATRKEITDTY
ISTFEQAGLQIDVLEINSFALIRTIREQLRQFGPQEAAVLVDIEFDSTEIAIIVNGVPQFSRTVPIGTYQMQTALARAMS
LPTSRDMELLHGMIIPPTPIDGGKTGVTEIDPGMAAILRVLGELTDELRRSIDFYLNQSENLEVAQILLAGPGGGLQQLD
EFFTQRLSLPTTQIDPIGALSLEVDTDKYPQVQRSGLAIVLGLGMREV

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=453979 HUN01_RS27265 WP_181928768.1 5806238..5807344(+) (pilM) [Nostoc edaphicum CCNP1411]
GTGGTAAAAAGCTTCAATAGTCTGTTTGGCAAATCGAAAAAAGGGGTCGGCATTGAACTTGCTCCCGAACGGGTAAATGT
AGTTCAGTTACGCAAGCAGGGTCAAGGCTTGAAACTAGAAACCTTTACATCTGTAGCAGTTCCAGAAGGCGTAGTTACCG
ATGGTCAAATAACTGACCCCGCAGCAATGGCGCAATTAATCCAGCAGGCGCTAGCTGAGAGCAAAATCAAAACTTCTCGT
GTTGCTACTGGTGTACCAGGGCGAGATTCCATCGTTCGGATTATACCAGTGCCAACGGAGTTAGATGACAAAGAACTGCG
AGAAATGGTGCTAAACCATGAAGCAGGTTTGTATTTACCCTATCCTCGTGAAGAGGCTGATGTAGATTATCAGAAACTTG
ACTACTTTATAGACGAGGATGGCATTGAAAAAGTACATGTACTTTTAGTTGCAACCCGTAAGGAGATAACAGATACCTAT
ATAAGTACTTTCGAGCAGGCAGGATTGCAAATTGATGTTTTAGAAATTAACAGTTTTGCGCTAATTCGGACTATTCGTGA
GCAACTGCGGCAATTTGGGCCGCAAGAAGCAGCAGTACTAGTTGATATAGAGTTCGATAGTACAGAAATTGCCATCATCG
TTAACGGAGTGCCGCAATTTTCGCGCACAGTCCCAATCGGGACTTATCAAATGCAAACGGCCTTAGCAAGGGCAATGAGC
TTACCCACATCACGAGATATGGAACTGTTACACGGAATGATTATTCCCCCAACTCCCATAGACGGCGGAAAAACTGGCGT
CACCGAAATCGATCCTGGTATGGCAGCCATATTAAGAGTATTGGGAGAACTAACGGATGAACTGCGCCGTTCCATCGATT
TTTACCTCAATCAAAGTGAAAATTTGGAGGTAGCGCAGATTTTATTAGCTGGGCCAGGAGGTGGACTCCAACAGCTAGAT
GAATTCTTTACCCAACGCTTGAGTTTGCCAACTACCCAAATAGATCCAATTGGGGCTTTGTCCTTAGAAGTTGACACTGA
TAAATATCCACAGGTACAACGCTCTGGTTTAGCGATCGTACTCGGTTTAGGAATGCGGGAGGTGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-238)

Type IV pilus assembly protein PilM; (PilM_2)

(283-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

66.757

99.728

0.666