Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   JDY60_RS03440 Genome accession   NZ_CP066172
Coordinates   721368..724643 (-) Length   1091 a.a.
NCBI ID   WP_200371432.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716368..729643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS03430 (JDY60_03430) - 716417..717595 (-) 1179 WP_200371430.1 hypothetical protein -
  JDY60_RS03435 (JDY60_03435) rexA 717718..721371 (-) 3654 WP_200371431.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  JDY60_RS03440 (JDY60_03440) rexB 721368..724643 (-) 3276 WP_200371432.1 ATP-dependent nuclease subunit B Machinery gene
  JDY60_RS03445 (JDY60_03445) - 724750..725169 (-) 420 WP_042768099.1 EVE domain-containing protein -
  JDY60_RS03450 (JDY60_03450) - 725162..725623 (-) 462 WP_200371433.1 MarR family winged helix-turn-helix transcriptional regulator -
  JDY60_RS03455 (JDY60_03455) - 725770..726579 (+) 810 WP_200371435.1 Cof-type HAD-IIB family hydrolase -
  JDY60_RS03460 (JDY60_03460) - 726722..727630 (+) 909 WP_000859678.1 ATP-binding cassette domain-containing protein -
  JDY60_RS03465 (JDY60_03465) - 727641..728393 (+) 753 WP_042768097.1 ABC transporter permease -
  JDY60_RS03470 (JDY60_03470) - 728432..729310 (-) 879 WP_042768096.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124616.40 Da        Isoelectric Point: 5.8315

>NTDB_id=453948 JDY60_RS03440 WP_200371432.1 721368..724643(-) (rexB) [Streptococcus oralis strain SF100]
MKLLYTDIRTSLTDILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFTQMARYLVLNDLPTKTS
LDDIGLGMAFYKCLAELDPKDLRVYGAIKQDPQFIQQLIELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFSQLALVIDGFTRFSAEEERVVDLLHRKGAEIVIGAYASKKAYTSPFTEGNLYQAS
VEFLHHLGAKYQTPAQDRSQTHEKMDSFDKASRLLESSYDFSELTLEVDEKDRENLQIWSCLMQKEELELVARAIRQKLH
DHPELSYKNFRILLGDVASYQLSLKTIFEQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDTFEQYLRYLGINGLPAFQQTFTKSHHGKFDLVHLNTLRLRILSPLETLFASRKQKTENLLQKWNTFLKNAALSK
QMQELTATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARNQLILSAPSLLNENE
SKESAYLQELVSFGFSRIEKKIHQKSLSKDDMGSYHSLLSSLVAYHQQGETSNTEQDLTFVKVLARVMGKKLDQKGLTNP
ALPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFEHALKLPA
ENPFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEAAFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLLAVKSLA
GAVAEVSKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILQGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=453948 JDY60_RS03440 WP_200371432.1 721368..724643(-) (rexB) [Streptococcus oralis strain SF100]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACAGATATTTTAACCAGAGAGGCAGAAGAGCTAGTTGCTGCTGG
CAAGCGGGTCTTCTACATCGCCCCCAACTCTCTTTCATTTGAAAAAGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGTTTCACTCAAATGGCTCGTTACCTGGTTTTAAATGACTTGCCGACTAAAACTAGT
CTAGATGACATCGGGCTTGGGATGGCTTTTTATAAGTGCCTTGCGGAACTCGATCCCAAGGACTTACGTGTTTATGGTGC
CATTAAGCAGGATCCTCAATTTATCCAGCAGTTGATTGAACTTTATCATGAGATGACGACTGCTCAGATGAGCTTTTTGG
ACTTGGAAAGTCTGACAGATGAGGATAAGCGAGCAGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTCAATCAA
GGTCAGTTGGCTCAGGGAAGTCAGTTATCTCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGTAGTGATTTCAGTCA
ACTTGCCTTAGTCATTGACGGATTTACCCGTTTTTCTGCCGAGGAAGAGCGTGTAGTGGATCTACTCCACCGAAAAGGTG
CCGAGATTGTCATTGGGGCCTATGCAAGCAAGAAAGCTTATACCAGTCCGTTTACTGAAGGAAATCTCTATCAAGCCAGT
GTGGAATTTCTTCATCATTTGGGGGCAAAATACCAAACACCTGCTCAGGATCGTTCTCAGACACATGAGAAAATGGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTATGACTTTTCAGAATTAACATTGGAGGTTGATGAGAAAGACCGTG
AAAATCTGCAAATTTGGTCTTGTTTGATGCAAAAAGAGGAGTTGGAGCTGGTGGCTCGCGCTATTCGTCAGAAATTACAT
GACCATCCAGAATTAAGTTACAAGAATTTTCGTATTCTCTTGGGTGATGTGGCTTCTTACCAGTTATCGCTGAAAACCAT
TTTTGAGCAGTACCAGATTCCTTTCTATCTTGGTAGAAGTGAATCCATGGCCCATCATCCCTTAACCCAGTATGTCGAAT
CTATTTTGCGTTTGAAACGCTACCGTTTCCGTCAGGAGGATTTGATTAATCTCCTCCGAACTGGTCTGTATACTGACCTT
AGCCAAGCGGATATTGATACTTTTGAGCAATATCTCCGCTATCTTGGCATCAATGGCTTGCCAGCTTTTCAGCAAACATT
TACTAAATCCCACCATGGAAAATTTGATTTAGTTCATTTAAATACTCTTCGTTTGCGTATTTTGTCACCACTTGAAACCT
TATTTGCCAGTCGGAAGCAAAAGACTGAAAATCTCTTGCAAAAGTGGAATACTTTTCTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGAATTGACAGCTACCATGGAAGCTCTTGAACAGGAAAGACAAGCCGAAGTTTGGAAAGCCTTCTGTCATGT
TTTAGAACAATTTGCGACGGTTTTTGCTGGTTCACAAGTTAGTCTGGAGGATTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCCCAGTATCGCACCATTCCAGCAACTGTTGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCGCCCTTAACG
GCTGATTTTGTCTATGCCATTGGGCTGACTCAGGATCATTTACCAAAAATTGCGCAAAACACCAGCCTGTTAACAGACGA
AGAAAGACAAAGCCTAAACCAAGCGACTGAAGAGGGAGCACAATTACTGATTGCAAGTAGTGAAAACCTCAAGAAAAATC
GCTACACCATGCTTTCCTTAGTCAATGCTGCCCGTAATCAGTTGATTTTGTCAGCTCCAAGTCTCCTCAATGAAAATGAG
AGCAAGGAATCGGCCTATCTTCAGGAACTGGTGAGTTTTGGATTTAGCCGAATAGAGAAGAAGATTCATCAAAAAAGTCT
GTCTAAGGATGATATGGGTTCATATCACAGCCTTTTGTCTAGTCTGGTTGCCTATCATCAGCAGGGCGAGACAAGTAATA
CTGAGCAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGGAAAAAACTTGACCAAAAAGGTCTTACAAATCCA
GCACTCCCAACTAGCCCAAGCAGCAAGCCATTAGAGAAAGAGACCTTGCAGGCTCTCTATCCCGCTGACAAAGAGTTTTA
CCTGTCTACGTCTGGTTTGACTGAGTTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGGCTTCGTCCAGATGCTCGCAGTCACGGGAATTTCTTGCACCGCATTTTTGAGCATGCCTTGAAACTACCTGCT
GAAAATCCATTTGACCAGCGTTTGGAGCAAGCTATTCAAGAAACTAGTCAAGAACGGGAATTTGAAGCCATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTCTACTTGATGTCGCGCGAACTACGGGCCATATCCTTCGGCATAATCCAG
CCATTGAAACCATCCAAGAGGAAGCAGCATTTGGTGGTAAAGATCAAGCCTTTATTCAATTGGATAATGGTCGGAGTGTC
CATGTGCGAGGCAAGGTTGACCGCATTGACCGCCTGAAAGCTGATGGAGCGTTAGGAGTGGTAGACTACAAGTCTAGTTT
AACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTTAATTCCCAGTTGCCAACCTATCTTGCTGCCTTAAAAAGAGAAG
GGGAGCAGAACTTTTTTGGCGCTATGTACTTGGAAATGGCTGAACCTGTCCAATCTTTATTAGCTGTTAAAAGTCTGGCA
GGAGCAGTAGCAGAAGTTAGCAAGTCTATGAAATACCAAGGTCTCTTTTTAGAAAAAGAAAGTAGTCATTTGGGAGAGTT
TTATAACAAAAACAAGGCTAATCAGCTGACAGACGAGGAATTCCAGCTCTTACTGGATTACAATGCCCATCTGTACAAAA
AGGCAGCTGAGAAGATTTTACAAGGCCAGTTTGCCATCAATCCATACACAGAGAATGGCAGAAGTATTGCCCCGTACGTT
CAGCAACACCAAGCCATCACTGGATTTGAAGCCAATTATCACTTAGGACAAGCACGTTTCCTAGAGAAGTTGGACTTAGC
TGATGGCAAGCGTCTGGTTGGAGAAAAGCTCAAGCAAGCTTGGTTTGAGAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

90.192

100

0.902