Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   JDY60_RS03435 Genome accession   NZ_CP066172
Coordinates   717718..721371 (-) Length   1217 a.a.
NCBI ID   WP_200371431.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 712718..726371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS03410 (JDY60_03410) - 713995..714774 (-) 780 WP_200371429.1 ribonuclease HII -
  JDY60_RS03415 (JDY60_03415) ylqF 714761..715612 (-) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -
  JDY60_RS03420 (JDY60_03420) mazE 715828..716043 (+) 216 WP_001098942.1 type II toxin-antitoxin system PemI/MazE family antitoxin -
  JDY60_RS03425 (JDY60_03425) - 716027..716383 (+) 357 WP_042902272.1 type II toxin-antitoxin system PemK/MazF family toxin -
  JDY60_RS03430 (JDY60_03430) - 716417..717595 (-) 1179 WP_200371430.1 hypothetical protein -
  JDY60_RS03435 (JDY60_03435) rexA 717718..721371 (-) 3654 WP_200371431.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  JDY60_RS03440 (JDY60_03440) rexB 721368..724643 (-) 3276 WP_200371432.1 ATP-dependent nuclease subunit B Machinery gene
  JDY60_RS03445 (JDY60_03445) - 724750..725169 (-) 420 WP_042768099.1 EVE domain-containing protein -
  JDY60_RS03450 (JDY60_03450) - 725162..725623 (-) 462 WP_200371433.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140292.79 Da        Isoelectric Point: 5.0983

>NTDB_id=453947 JDY60_RS03435 WP_200371431.1 717718..721371(-) (rexA) [Streptococcus oralis strain SF100]
MKPISFLTEEEIQKLQKAEASSSKEQKKTAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFT
VKAATELKERLEKKISQQIQETDDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLLLK
NEVFHQVFEEHYQGENKEKFSRLVKNFAGRGKDERGLRQQVYKIYDFLQSTSSPQKWLNESFLKGFEEADFANEKDKLTE
QIKQALWDLESFFRYHLDNDAKEFPKAAYLENVQLVLDEIGSLNQESDSQAYQAVLARIIAISKEKNGRSLANSSRKADL
KPLADAYNEERKTQFAKLGQLADQITILDYQERYHEDTWELAKTFQTFMSDFVEAYRERKHQENAFEFADISHYTIEILE
NFPQVREAYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPKEGKLIL
LKENFRSSSEVLSATNDVFGRLMDQEVGEINYDSMHQLVFANTKLTPNLDNKAEFLLYDKDDSGQEEEESQTESKLTGEM
RLVIKEILKLHQEKGVAFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFSFDEDELARLSLQKIEDKAQENLYEKLVNAQKLATSQKNLIYTALAEKLNQFMDILDSWRLYAKTHSLYDLI
WKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEVQHDLASVAVAPPKDAVELLTIHK
SKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVEAHYPKTIKLSIPSLTYTQNEKELQLASYSEQ
MRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAANNGKLDSNTRLQARNFQDWVWAISKVFTKDNLNFSYRFVGEDLLTR
EAIGQLENKSPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEITNQTQSS
EKKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLIQQPTLASLTETLKQVQTSPAVRDKINLSKILAFFDTALGQEILA
NTSHLYREQPFSMLKKDQKSKEDFVVRGILDGYLLYEDRIVLFDYKTDRYDEPSQLIDRYRGQLALYGEALSRAYSIENI
EKYLILLGKDEVQVVKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=453947 JDY60_RS03435 WP_200371431.1 717718..721371(-) (rexA) [Streptococcus oralis strain SF100]
ATGAAGCCCATTTCCTTTTTAACTGAGGAAGAAATTCAAAAACTGCAAAAAGCAGAAGCAAGTTCGAGCAAGGAACAGAA
GAAAACAGCCGAGCAAATCGAAGCCATTTATACCGCAGGGCAAAATATCCTTGTTTCAGCGTCTGCTGGTTCAGGGAAGA
CCTTTGTCATGGCAGAGCGTATTCTGGATCAGTTAGCACGTGGTGTGGAAATCAGCCAACTCTTTATCTCGACCTTTACC
GTCAAGGCTGCTACAGAACTCAAGGAACGTTTGGAGAAAAAAATCAGCCAACAAATACAAGAAACCGATGATGTCGATCT
CAAACAACACTTGGGACGCCAGTTGGCAGATCTACCAAACGCTGCCATCGGAACCATGGACTCCTTCACGCAAAAATTCC
TTGGCAAACATGGCTATCTGATTGATATCGCACCGAACTTCCGTATTTTGCAAAATGAAAGTGAACAGTTACTCTTAAAG
AACGAAGTTTTTCATCAGGTTTTTGAAGAGCATTACCAAGGTGAAAATAAAGAGAAATTTAGTCGATTAGTGAAAAACTT
TGCTGGACGTGGCAAGGATGAACGAGGTCTGCGCCAGCAAGTCTACAAAATCTATGATTTCCTTCAATCCACCAGCAGTC
CCCAAAAATGGCTGAACGAGTCTTTCCTCAAAGGGTTTGAAGAAGCTGACTTTGCAAATGAAAAAGACAAACTAACTGAG
CAAATCAAGCAGGCGCTTTGGGACTTGGAAAGTTTCTTCCGTTATCATCTGGATAACGATGCCAAGGAGTTTCCAAAAGC
TGCCTATTTAGAAAATGTGCAGCTGGTTCTGGATGAAATTGGCTCCTTAAATCAAGAGTCCGATAGCCAGGCTTATCAAG
CTGTGCTTGCGCGTATTATCGCCATCTCTAAGGAGAAAAATGGTCGATCTCTAGCTAACTCCAGTCGTAAGGCCGATTTG
AAGCCACTGGCTGATGCCTACAACGAAGAGAGAAAGACCCAGTTTGCTAAACTAGGACAACTAGCGGACCAGATAACCAT
TCTCGACTACCAAGAACGTTATCATGAAGATACTTGGGAGCTAGCTAAAACTTTCCAAACCTTTATGAGTGATTTTGTGG
AGGCTTATCGTGAACGCAAACACCAGGAAAATGCCTTTGAATTCGCTGATATTAGTCATTACACCATTGAGATTTTAGAG
AATTTCCCACAAGTCCGCGAGGCTTATCAGGAACGATTCCACGAAGTCATGGTCGATGAGTATCAGGATACTAACCACAT
TCAAGAACGGATGCTGGAATTGCTGTCGAATGGTCACAATCGCTTTATGGTGGGAGATATCAAGCAGTCTATCTACCGTT
TCCGTCAGGCAGATCCCCAAATTTTCAATGAAAAATTTCAACGCTATGCGCAAAATCCTAAAGAGGGGAAGTTGATACTC
CTCAAGGAAAATTTCCGTAGCAGTTCAGAAGTGCTATCAGCAACCAATGATGTTTTTGGACGCCTTATGGACCAAGAGGT
CGGCGAAATCAACTATGATAGCATGCACCAGCTTGTTTTTGCCAATACCAAACTAACTCCCAATCTAGACAACAAGGCAG
AATTTCTCCTCTACGATAAGGACGATAGTGGGCAAGAGGAGGAAGAGAGCCAAACAGAATCGAAACTAACTGGGGAAATG
CGTCTGGTCATCAAGGAAATCTTGAAGCTCCATCAAGAGAAAGGTGTAGCCTTTAAGGAAATTGCCCTTTTGACTTCCAG
TCGCAGTCGAAATGACCAGATTCTACTTGCCCTGTCTGAGTACGGAATTCCAGTTAAAACCGACGGTGAGCAAAACAACT
ACCTCCAATCCCTAGAAGTACAAGTCATGCTGGACACCCTGCGCGTCATTCACAATCCCCTGCAAGACTATGCCTTGGTA
GCTCTGATGAAGTCTCCTATGTTTAGTTTCGATGAGGACGAGTTGGCACGCTTGTCCCTTCAGAAAATAGAAGATAAGGC
CCAAGAAAATCTCTATGAGAAACTGGTCAATGCTCAAAAACTGGCAACAAGTCAGAAAAACTTGATTTATACAGCTCTAG
CTGAAAAACTCAATCAATTCATGGATATTTTGGATTCTTGGCGCTTGTATGCCAAAACCCACTCTCTCTATGACTTGATT
TGGAAGATTTACAACGACCGTTTTTACTATGACTATGTTGGAGCCCTGCCAAACGGTCCAGCTAGACAGGCCAATCTCTA
TGCCCTAGCTCTACGAGCTGACCAGTTTGAAAAGAGTAATTTCAAGGGCTTGTCTCGTTTTATCCGTATGATTGACCAAG
TCCTAGAAGTCCAGCACGATCTCGCAAGTGTAGCCGTCGCACCGCCTAAAGATGCTGTGGAACTCTTGACCATTCACAAG
AGCAAAGGACTGGAGTTTCCTTATGTCTTTATCCTCAACATGGATCAGGACTTCAACAAGCAAGACTCGATGTCAGACGT
CATTCTCAGCCGTCAAAATGGGCTTGGTGTCAAATACATTGCCAAGGTGGAAACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATCAAACTCTCCATTCCTAGCCTGACCTATACGCAGAATGAGAAAGAACTGCAACTGGCTAGCTATTCAGAGCAG
ATGCGTCTGCTGTATGTTGCCATGACAAGGGCTGAGAAAAAGCTCTATCTTGTTGGCAAGGGCTCTCGCGAAAAGCTAGA
AGCCAAGGAATACCCAGCAGCAAACAATGGAAAATTAGATAGCAATACCAGACTGCAAGCAAGAAATTTCCAAGATTGGG
TCTGGGCTATCAGTAAAGTATTTACCAAGGACAATCTCAACTTTAGCTATCGTTTTGTTGGTGAAGACCTGTTGACTAGA
GAAGCTATTGGTCAATTGGAAAACAAGAGCCCTCTCCAAGATAGCTCTCAAGCAGACAACCGCCAGTCAGAAACTATCAA
AGAAGCTTTGGAAATGCTGAAAGAGGTGGAAGTTTATAATACTCTTCACCGCGCAGCCATTGAACTACCAAGTGTTCAAA
CCCCAAGCCAAATCAAGAAATTCTACGAACCGGTTATGGATATGGAAGGGGTAGAAATTACTAACCAAACTCAATCATCG
GAAAAGAAAATCAGCTTTGATTTACCAGATTTTTCAACTAAAGAAAAGGTAACTGGAGCTGAGATTGGTAGTGCAACCCA
CGAACTCATGCAAAGAATTGACCTCATTCAGCAACCAACACTTGCTAGCCTGACAGAAACTCTCAAACAAGTTCAGACTA
GTCCAGCTGTTAGAGACAAGATCAATCTTTCTAAAATTCTTGCCTTCTTTGATACAGCACTTGGTCAGGAAATTCTCGCT
AATACCAGCCATCTTTACCGCGAGCAACCTTTCTCCATGCTCAAAAAAGATCAAAAGAGTAAGGAAGATTTCGTTGTCCG
TGGAATCTTGGATGGCTATCTGCTTTATGAGGATCGCATCGTTCTTTTCGACTACAAAACAGACCGTTACGATGAACCAA
GTCAACTCATAGACCGCTATCGTGGTCAGTTAGCCTTATACGGAGAGGCTTTATCTAGAGCCTATTCGATTGAAAACATA
GAAAAATACTTGATTTTGCTAGGTAAAGATGAGGTTCAAGTTGTAAAAGTATAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

92.112

100

0.921