Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DPAN417_RS00045 Genome accession   NZ_CP054657
Coordinates   10353..10916 (+) Length   187 a.a.
NCBI ID   WP_086120105.1    Uniprot ID   -
Organism   Limosilactobacillus reuteri strain AN417     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5353..15916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPAN417_RS00035 (DPAN417_00035) gyrA 7314..9818 (+) 2505 WP_174891746.1 DNA gyrase subunit A -
  DPAN417_RS00040 (DPAN417_00040) rpsF 10019..10315 (+) 297 WP_003665235.1 30S ribosomal protein S6 -
  DPAN417_RS00045 (DPAN417_00045) ssb 10353..10916 (+) 564 WP_086120105.1 single-stranded DNA-binding protein Machinery gene
  DPAN417_RS00050 (DPAN417_00050) rpsR 10950..11186 (+) 237 WP_003665240.1 30S ribosomal protein S18 -
  DPAN417_RS00055 (DPAN417_00055) - 11402..13420 (+) 2019 WP_004562493.1 DHH family phosphoesterase -
  DPAN417_RS00060 (DPAN417_00060) rplI 13426..13878 (+) 453 WP_003665243.1 50S ribosomal protein L9 -
  DPAN417_RS00065 (DPAN417_00065) dnaB 13912..15303 (+) 1392 WP_004562494.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20589.31 Da        Isoelectric Point: 4.4652

>NTDB_id=453885 DPAN417_RS00045 WP_086120105.1 10353..10916(+) (ssb) [Limosilactobacillus reuteri strain AN417]
MLNRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFINCVIWRKSAENFSNFTHKGSLVGIEGRIQTR
NYENQQGNRVYVTEVVVDNFALLEPRQNGGINQSGMQQPFNNNQQSFGAQAPQYGSQPQPGNNAPQSNPSPSMDNGFDPN
QNAGNQFPGSSDDGGQSIDLADDELPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=453885 DPAN417_RS00045 WP_086120105.1 10353..10916(+) (ssb) [Limosilactobacillus reuteri strain AN417]
ATGCTTAATCGTGCAGTCTTAACTGGGCGTTTAACAAGAGATCCCGAGTTGCGGTACACAACCAGCGGGACAGCAGTTGT
TTCATTTACGTTAGCTGTTGATCGGCAATTCCGAAACCAAAATGGTGATCGTGATGCTGATTTTATCAATTGCGTTATTT
GGCGTAAATCCGCTGAAAACTTTAGTAACTTTACGCATAAGGGTTCACTTGTTGGAATTGAAGGGCGTATTCAAACCCGG
AATTATGAAAACCAACAGGGTAACCGTGTATATGTTACCGAAGTTGTTGTAGATAATTTTGCATTGTTAGAACCTCGTCA
AAATGGTGGTATAAACCAATCAGGGATGCAACAACCATTTAACAATAACCAACAATCGTTTGGTGCTCAGGCTCCACAAT
ATGGCAGTCAACCACAACCCGGAAATAATGCTCCTCAAAGTAATCCGTCACCAAGTATGGACAATGGTTTCGATCCCAAT
CAAAATGCTGGCAACCAGTTCCCTGGAAGCAGTGATGATGGTGGTCAATCCATTGATTTAGCTGATGACGAATTACCATT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.574

100

0.599
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.895

100

0.487