Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   I6I02_RS07995 Genome accession   NZ_CP066093
Coordinates   1753786..1755771 (-) Length   661 a.a.
NCBI ID   WP_198463419.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1748786..1760771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS07955 (I6I02_07955) - 1748843..1749499 (-) 657 WP_002890229.1 glucosaminidase domain-containing protein -
  I6I02_RS07960 (I6I02_07960) - 1749623..1749861 (-) 239 Protein_1583 ammonia permease -
  I6I02_RS07965 (I6I02_07965) rsmI 1749984..1750850 (-) 867 WP_198463417.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  I6I02_RS07970 (I6I02_07970) yabA 1750853..1751173 (-) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  I6I02_RS07975 (I6I02_07975) yaaT 1751160..1751966 (-) 807 WP_073950236.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  I6I02_RS07980 (I6I02_07980) - 1751963..1752838 (-) 876 WP_195413696.1 DNA polymerase III subunit delta' -
  I6I02_RS07985 (I6I02_07985) tmk 1752847..1753476 (-) 630 WP_198463418.1 dTMP kinase -
  I6I02_RS07995 (I6I02_07995) recP/tkt 1753786..1755771 (-) 1986 WP_198463419.1 transketolase Machinery gene
  I6I02_RS08000 (I6I02_08000) tpiA 1756034..1756792 (-) 759 WP_002890214.1 triose-phosphate isomerase -
  I6I02_RS08005 (I6I02_08005) tuf 1757046..1758242 (-) 1197 WP_002890213.1 elongation factor Tu -
  I6I02_RS08010 (I6I02_08010) ftsW 1758479..1759759 (-) 1281 WP_049545801.1 cell division peptidoglycan polymerase FtsW -
  I6I02_RS08015 (I6I02_08015) - 1760019..1760435 (-) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70866.50 Da        Isoelectric Point: 4.8035

>NTDB_id=453797 I6I02_RS07995 WP_198463419.1 1753786..1755771(-) (recP/tkt) [Streptococcus salivarius strain FDAARGOS_1045]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEASSLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEAGIKFRGEAAENAWQTKFAEYE
TAYPELAAEYKAAFANEPVHVNLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAETGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=453797 I6I02_RS07995 WP_198463419.1 1753786..1755771(-) (recP/tkt) [Streptococcus salivarius strain FDAARGOS_1045]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTCAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCTGGTCATGGTTCTGCCTTGCTTTATAGTCTATTGCAC
CTTTCTGGCTATGATGTGACAATGGACGACTTGAAGAATTTCCGTCAATGGGGATCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCTCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCGCAAGAAGCTTCCAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACTTCAATGGCTTTCACTGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCCATCGAAGAAGCTAAGGCTGAGACAGAT
AAACCATCTATCATTGAAGTTAAGACAATCATTGGTTATGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATCGGTCAAGATGGCATTGATCACGCAAAAGGTGTTTACGGTTATGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTTGAAGCTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
ACTGCTTACCCAGAATTGGCTGCTGAATACAAGGCTGCCTTTGCAAATGAACCTGTACACGTTAACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTATCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGACAACTATGCTGGA
CGTAATATTTGGTTTGGTGTGCGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACCTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCTCTTCAAAACTTGCCAGTAA
CTTATGTTATGACACACGACTCGGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGACGGTAATGAAACTAATGCTGCATGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTCTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACTGCTGAAAATGCTGAAACTG
GTGTCAATAAAGGAGCTTACATCATCTCAGAAGCAAAAGGTGATCTTGATGGTATCATCATTGCCACTGGTTCTGAAGTG
AAATTGGCTCTTGATACGCAGGCTGCTCTTGAAGCTGAAGGTGTGCATGTTCGTGTTGTTTCAATGCCATCACAAAACCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTCCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.535

99.546

0.563