Detailed information NTG0453761

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HR116_RS04740
• Genome accession: NZ_CP054591
• Coordinates: 1059699..1060571 (-)
• Length: 290 a.a.
• NCBI ID: WP_003161765.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain CDN118
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1054699..1065571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HR116_RS04695	-	1055560..1055730 (-)	171	WP_003094672.1	DUF3094 family protein	-
HR116_RS04700	-	1055756..1056205 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
HR116_RS04705	-	1056202..1056831 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
HR116_RS04710	-	1056964..1057389 (+)	426	WP_003161766.1	GNAT family N-acetyltransferase	-
HR116_RS04715	-	1057386..1057856 (+)	471	WP_003094664.1	hypothetical protein	-
HR116_RS04720	-	1057853..1058542 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
HR116_RS04725	-	1058648..1058857 (+)	210	WP_020750398.1	hypothetical protein	-
HR116_RS04730	yacG	1058894..1059094 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
HR116_RS04735	coaE	1059091..1059702 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
HR116_RS04740	pilD	1059699..1060571 (-)	873	WP_003161765.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
HR116_RS04745	pilC	1060572..1061789 (-)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
HR116_RS04750	pilB	1061793..1063493 (-)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HR116_RS04755	-	1063724..1064191 (+)	468	WP_003161762.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=453761 HR116_RS04740 WP_003161765.1 1059699..1060571(-) (pilD) [Pseudomonas aeruginosa strain CDN118]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=453761 HR116_RS04740 WP_003161765.1 1059699..1060571(-) (pilD) [Pseudomonas aeruginosa strain CDN118]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469