Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HT135_RS18725 Genome accession   NZ_CP054584
Coordinates   3640843..3642237 (-) Length   464 a.a.
NCBI ID   WP_106019638.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3635843..3647237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS18690 (HT135_18685) flgL 3636019..3636915 (-) 897 WP_106019635.1 flagellar hook-associated protein FlgL -
  HT135_RS18695 (HT135_18690) flgK 3636925..3638448 (-) 1524 WP_095712911.1 flagellar hook-associated protein FlgK -
  HT135_RS18700 (HT135_18695) flgN 3638467..3638949 (-) 483 WP_106019636.1 flagellar protein FlgN -
  HT135_RS18705 (HT135_18700) flgM 3638965..3639231 (-) 267 WP_106019637.1 flagellar biosynthesis anti-sigma factor FlgM -
  HT135_RS18710 (HT135_18705) - 3639311..3639730 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  HT135_RS18715 (HT135_18710) comFC 3639804..3640526 (-) 723 WP_127696434.1 phosphoribosyltransferase family protein Machinery gene
  HT135_RS18720 (HT135_18715) - 3640490..3640786 (-) 297 WP_024123028.1 late competence development ComFB family protein -
  HT135_RS18725 (HT135_18720) comFA 3640843..3642237 (-) 1395 WP_106019638.1 ATP-dependent helicase ComFA Machinery gene
  HT135_RS18730 (HT135_18725) - 3642344..3643189 (-) 846 WP_106019639.1 DegV family protein -
  HT135_RS18735 (HT135_18730) degU 3643286..3643975 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HT135_RS18740 (HT135_18735) degS 3644058..3645215 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  HT135_RS18745 (HT135_18740) - 3645432..3646085 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52784.87 Da        Isoelectric Point: 9.7189

>NTDB_id=453743 HT135_RS18725 WP_106019638.1 3640843..3642237(-) (comFA) [Bacillus halotolerans strain KKD1]
MQTKTSESNSPFSKELQQQLQGRHLLKTEIPFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDISLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IESALNLRLRVCIATPRTDVVLELAPRLKAAFQGADISVLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGKPVFLFVPSISVLVKAASCFKNMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=453743 HT135_RS18725 WP_106019638.1 3640843..3642237(-) (comFA) [Bacillus halotolerans strain KKD1]
ATGCAGACTAAGACATCAGAATCGAACAGCCCATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAA
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATATTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATCGGCATTAAATCTAAGACTGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGTTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CATTGCCTGAACCGCGCTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAAGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTCTGGTAAAAGCTGC
TTCCTGTTTTAAAAACATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATTGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.061

98.707

0.83