Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   HT135_RS16800 Genome accession   NZ_CP054584
Coordinates   3254488..3254628 (-) Length   46 a.a.
NCBI ID   WP_024122683.1    Uniprot ID   A0A9Q4HP57
Organism   Bacillus halotolerans strain KKD1     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3249488..3259628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS16775 (HT135_16770) - 3249770..3250150 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  HT135_RS16780 (HT135_16775) comA 3250168..3250812 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  HT135_RS16785 (HT135_16780) - 3250893..3253200 (-) 2308 Protein_3280 histidine kinase -
  HT135_RS16790 (HT135_16785) comX 3253216..3253437 (-) 222 WP_059292642.1 competence pheromone ComX -
  HT135_RS16795 (HT135_16790) - 3253434..3254303 (-) 870 WP_101864136.1 polyprenyl synthetase family protein -
  HT135_RS16800 (HT135_16795) degQ 3254488..3254628 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  HT135_RS16805 (HT135_16800) - 3255089..3255457 (+) 369 WP_106019478.1 hypothetical protein -
  HT135_RS16810 (HT135_16805) - 3255433..3256662 (-) 1230 WP_106019479.1 EAL and HDOD domain-containing protein -
  HT135_RS16815 (HT135_16810) - 3256798..3258267 (-) 1470 WP_024122686.1 nicotinate phosphoribosyltransferase -
  HT135_RS16820 (HT135_16815) - 3258283..3258834 (-) 552 WP_106019480.1 cysteine hydrolase family protein -
  HT135_RS16825 (HT135_16820) - 3258931..3259329 (-) 399 WP_106019481.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5533.44 Da        Isoelectric Point: 6.2559

>NTDB_id=453739 HT135_RS16800 WP_024122683.1 3254488..3254628(-) (degQ) [Bacillus halotolerans strain KKD1]
MEKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYTYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=453739 HT135_RS16800 WP_024122683.1 3254488..3254628(-) (degQ) [Bacillus halotolerans strain KKD1]
ATGGAAAAGAAACTTGAAGAAGTAAAACAATTGTTATTCCGACTCGAACTTGATATTAAAGAAACGACAGATTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATACACATACGCAATGAAAATTTCGTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

97.826

100

0.978