Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HT135_RS16780 Genome accession   NZ_CP054584
Coordinates   3250168..3250812 (-) Length   214 a.a.
NCBI ID   WP_024122680.1    Uniprot ID   A0A9Q6AB41
Organism   Bacillus halotolerans strain KKD1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245168..3255812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS16745 (HT135_16740) - 3246361..3246792 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  HT135_RS16750 (HT135_16745) - 3246792..3247133 (+) 342 WP_044158938.1 Na(+)/H(+) antiporter subunit C -
  HT135_RS16755 (HT135_16750) - 3247126..3248607 (+) 1482 WP_106019476.1 Na+/H+ antiporter subunit D -
  HT135_RS16760 (HT135_16755) - 3248613..3249089 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  HT135_RS16765 (HT135_16760) - 3249089..3249373 (+) 285 WP_106019477.1 Na(+)/H(+) antiporter subunit F1 -
  HT135_RS16770 (HT135_16765) mnhG 3249357..3249731 (+) 375 WP_024122678.1 monovalent cation/H(+) antiporter subunit G -
  HT135_RS16775 (HT135_16770) - 3249770..3250150 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  HT135_RS16780 (HT135_16775) comA 3250168..3250812 (-) 645 WP_024122680.1 two-component system response regulator ComA Regulator
  HT135_RS16785 (HT135_16780) - 3250893..3253200 (-) 2308 Protein_3280 histidine kinase -
  HT135_RS16790 (HT135_16785) comX 3253216..3253437 (-) 222 WP_059292642.1 competence pheromone ComX -
  HT135_RS16795 (HT135_16790) - 3253434..3254303 (-) 870 WP_101864136.1 polyprenyl synthetase family protein -
  HT135_RS16800 (HT135_16795) degQ 3254488..3254628 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  HT135_RS16805 (HT135_16800) - 3255089..3255457 (+) 369 WP_106019478.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24109.42 Da        Isoelectric Point: 4.6730

>NTDB_id=453738 HT135_RS16780 WP_024122680.1 3250168..3250812(-) (comA) [Bacillus halotolerans strain KKD1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGDILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=453738 HT135_RS16780 WP_024122680.1 3250168..3250812(-) (comA) [Bacillus halotolerans strain KKD1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGACATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCGGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986