Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   I6I02_RS00940 Genome accession   NZ_CP066093
Coordinates   187404..191057 (+) Length   1217 a.a.
NCBI ID   WP_198463627.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 182404..196057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS00930 (I6I02_00930) - 182473..183846 (+) 1374 WP_070839219.1 GHKL domain-containing protein -
  I6I02_RS00935 (I6I02_00935) rexB 184094..187414 (+) 3321 WP_198463626.1 ATP-dependent nuclease subunit B Machinery gene
  I6I02_RS00940 (I6I02_00940) rexA 187404..191057 (+) 3654 WP_198463627.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6I02_RS00945 (I6I02_00945) - 191409..192140 (-) 732 WP_118184957.1 DUF554 domain-containing protein -
  I6I02_RS00950 (I6I02_00950) - 192416..193147 (+) 732 WP_002891761.1 ABC transporter ATP-binding protein -
  I6I02_RS00955 (I6I02_00955) - 193150..194739 (+) 1590 WP_198463628.1 DUF4231 domain-containing protein -
  I6I02_RS00960 (I6I02_00960) proB 194859..195662 (+) 804 WP_118184953.1 glutamate 5-kinase -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 138183.31 Da        Isoelectric Point: 4.7576

>NTDB_id=453732 I6I02_RS00940 WP_198463627.1 187404..191057(+) (rexA) [Streptococcus salivarius strain FDAARGOS_1045]
MLTKAFLSPTEIKERIAQEAASDKERKLTPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFFSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPVFRIMTDPAEQTLMK
NEVYADLFNDYMQGKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYNFSQATAGPEKWLRQNLLKGQTDAKPDQAKVELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
VYKETYNRNKNEFVAQLREIDTQLTVLEVLTKHNDDILPLLELLQAFVLDFSDQYLQAKVQENAFEFSDIAHFAIRILEE
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKEPHPENETEVLIYNSDEASVTPDEEGSDQPISSGE
ISLVIKEIISLHKQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADEGQFYDKLLVACTKTGLHPEVVTQGLDAKLTLFTETLADWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSRDGLSGKYIINRDKGLGIKYLADLKDQVNTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVQVKAAVNADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETTATFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKFILA
NRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTHPSELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGKDLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=453732 I6I02_RS00940 WP_198463627.1 187404..191057(+) (rexA) [Streptococcus salivarius strain FDAARGOS_1045]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAACGTATTGCCCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAGGCCATTTACAGTAATGGTAGCAATATTCTTGTGTCAGCTTCGGCCGGATCAGGAAAAA
CTTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGTATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCTGCAGGTGAGTTGAAAGAGCGTCTGGAAAAGCGTCTGACAGAGCAGTTGGGACAAGTTGAGACGGATGAAGA
GCGTGCCTTTTTTTCAGACCAGATTGCCAAAATTGGGACGGCTGATATTGGAACCATGGATGCCTTCACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGTGTGTCACCTGTTTTTCGAATCATGACGGATCCTGCTGAGCAGACACTCATGAAA
AATGAGGTGTATGCCGATCTTTTCAACGATTACATGCAAGGAAAGGATGCCCAACTTTTCCAAAAATTGGTCCGCAACTT
CGCTGGAAATGGTAAGACTAGTAAGGCCTTCCGTGATCTAGTTTACGATGTCTATAACTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAGAATCTCTTAAAAGGGCAGACGGATGCCAAGCCAGACCAGGCTAAAGTTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCCTTCTTAAGAGACCATCTAGGTCTAGCTCAGCGTGAATTTGCCAA
GGCCAAGTATCTGAATAATGTGTCAGATGCCATTAGCCTTCTGGAGGGAGCCTTGGCCAATGACCAAACCGATATGGAGG
ACTTGCTCAAACAACTCTTGACTCTGTCAGGAGGGACTGGCTTGACAAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GTCTACAAGGAAACTTACAACAGGAACAAAAATGAGTTTGTGGCCCAGTTGCGTGAGATTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATCCTACCTCTGTTAGAGCTACTTCAGGCCTTTGTGCTTGATTTTTCAGACC
AGTATTTACAGGCCAAGGTTCAGGAAAATGCCTTTGAATTCTCAGATATTGCCCACTTTGCCATCCGTATTTTGGAGGAA
AATCCAGAGGTGGCAGCCAGCTACCGTGACCGTTACCATGAAGTAATGGTAGACGAGTATCAAGACAATAGCCATACCCA
AGAACGCATGTTGGAGCTCCTCTCTAACGGTCACAACCGATTCATGGTGGGAGATATCAAGCAATCTATCTATCGTTTCC
GTCAGGCAGACCCTCAGATTTTTAATGGCAAGTTCCAGCTCTTCCTTGAAAATCCAGATGCAGGTAAGCTGATTCTCCTT
AAAGAGAACTTCCGTAGCCAATCTGAGGTTCTTGATGCGACTAATGGTGTTTTCAGCCACCTCATGGATCAGGAAATCGG
AGATATCCTTTATGACAAGACACATATGTTGGTAGCCGGTAGCGAGAAGCAAAAAGAGCCCCATCCTGAAAATGAGACTG
AGGTTCTGATTTACAATAGTGATGAAGCAAGTGTGACTCCTGACGAGGAAGGTTCTGATCAACCTATCAGTAGTGGTGAG
ATTTCCTTGGTTATCAAAGAAATTATCAGTCTTCATAAGCAGGGTGTACGTTTTGAGGACATTACCCTCCTAGCACCAAC
CCGCAACACCTATCTGGACTTGATGGCAAGCTTCGAGGAGCACGGAATTCCTTTGGTTCCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCGCTAGAAGTTATGATTATGTTGGATACCCTTCGTGCCATCAATAATCCTCTTAATGACTATGCCCTCGTT
GCCCTCCTTCGTTCACCGATGTTTAATTTCAACGAGGATGATTTGGCTCGTATTGCTGTCCAGGCTGACGAAGGACAATT
CTATGACAAGCTTCTTGTAGCATGCACTAAAACAGGGCTTCATCCGGAAGTTGTCACACAAGGACTTGATGCCAAGTTGA
CTCTTTTCACTGAGACTCTGGCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTACGACCTCATTTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTTGGCAGTCTTCCACGAGCTGAGCAACGCCAGGCCAATCTCTACGCCCTTGCCTT
GCGTGCCAATGCCTATGAAAAGACTGGTTTTAAGGGACTTTCTCGTTTTATTGGTATGATTGATAAGATCATTTCTAGCG
GTAACGACCTAGAGGAAGTAACAGACTTGGTTCCCAAAAATGCCGTTAGCCTCATGACCATTCACAAGTCCAAGGGACTA
GAGTTCAAGTATGTCTTTGTCTTGCAGATGAATCGCAAGTTCATTGGTCACAGTAGGGATGGACTAAGTGGTAAGTATAT
TATCAACCGTGATAAAGGACTTGGCATTAAGTACCTAGCTGACCTTAAAGACCAGGTAAACACCAATTTGCCCAAGTTAA
ATGTTGTTCTAGAGACCCTAACCTTCCAGGAAAATCGTAGGGAAGAGCGCAGGGCAAGTATCTCAGAAGAGATGCGTCTG
CTCTATGTTGCAATGACTCGTGCAGAGAAAAAACTCTACCTAGTTGGTAAGGGTAGTAAGGAAAAATTAACCCAGCAATT
TGGTACGGATGTCGAAAATAATCGCCTACCAGTAGCTCTACGTGACCAAATCGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACCGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGACGCCAGAGGCTATT
GGTCAGGTTCAAGTCAAGGCGGCAGTAAATGCTGATGATTTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCTCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAACCAGCTTTATGCACCAGCGATTGACCTACCATCTGTGCGTACGCCGAGCC
AGCTCAAAGCCTTCTACGAACCTGTTATGGATACCGAAGGGGTGGATATTATGGACAAGAAAGAGGAAGTGCAACCTCTT
GAGACTACCGCTACCTTTGAGCTTCCAGACTTTGGGCAAAAAACTAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGACAAGGTGACCCTCCAAGATTTGACACAGGCGTTGAGTCGGGTATCGGCAG
ATGATCAAGTTAAGGCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGTTCATTCTAGCT
AACCGTGGTAAGTTGCGTCGTGAAGCACCATTTGCTATGTTGGCAGAAGATCCCGCTAGTAAAGAAGATTTTGTCGTCCG
TGGTATCATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACGGACCGCTTCACTCATCCTA
GTGAACTTAAGGAACGTTACAAAGGGCAAATGAGCCTCTATGCTAAAGCACTCAGCCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTTGGTGGAAAAGACTTGGAAGTCGTAGAAGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.694

100

0.51