Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   I6I02_RS00935 Genome accession   NZ_CP066093
Coordinates   184094..187414 (+) Length   1106 a.a.
NCBI ID   WP_198463626.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 179094..192414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS00920 (I6I02_00920) - 179105..180847 (+) 1743 WP_198463625.1 DUF6287 domain-containing protein -
  I6I02_RS00925 (I6I02_00925) - 181127..182437 (+) 1311 WP_110981190.1 hypothetical protein -
  I6I02_RS00930 (I6I02_00930) - 182473..183846 (+) 1374 WP_070839219.1 GHKL domain-containing protein -
  I6I02_RS00935 (I6I02_00935) rexB 184094..187414 (+) 3321 WP_198463626.1 ATP-dependent nuclease subunit B Machinery gene
  I6I02_RS00940 (I6I02_00940) rexA 187404..191057 (+) 3654 WP_198463627.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6I02_RS00945 (I6I02_00945) - 191409..192140 (-) 732 WP_118184957.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 125996.40 Da        Isoelectric Point: 4.8581

>NTDB_id=453731 I6I02_RS00935 WP_198463626.1 184094..187414(+) (rexB) [Streptococcus salivarius strain FDAARGOS_1045]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLDYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQAEKQEDLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYASQKAYKANFVYGNVYQAS
VDFLKTLAQTYKVTPDYVTTDKEGNPSFARISRLLESRHDFSTVDEKVTDQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFTQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNALRSQLVEPLDKLLNSRKQKGSSLLKKLAVFLGTVQVPNQM
AALTVKASEAEKEQNEQVWKSFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSVAVRYLRKRLDKDQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFEILYTEDQESCLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLVQFGLDKLAAQANK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLDYNIKLFTDAAEIIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSKGKKEAYLELMTKDEDKNQMQVAENIIPFLVTNQAVTADKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=453731 I6I02_RS00935 WP_198463626.1 184094..187414(+) (rexB) [Streptococcus salivarius strain FDAARGOS_1045]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACTGAAATTCTGACGGAGCAGGCAACTAGCTATGCTCAAAAGGG
AAAGAGGGTCTTTTATATTGCTCCTAATGCCCTATCATTTGAAAAGGAGCGTAAGGTCTTGGACTACCTGCCTCAGTCAG
CGTCCTTTGAGATTACGGTGACGCGTTTTACTCAGATGGCTAGGTACTTTATTCTCAATACGAGTAACCCGAAAACTCAG
CTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTCTTGTCACATATGGGCGATGATGAGCTCAAGGTTTATGGTCG
TTTACGCAAGGATAGTAACTTTATTAATCAATTGGTGGACCTTTACAAAGAGTTACAGCAGGCTAATATGACAGTTCTGG
ATTTGCAGCATTTGGATCAGGCGGAGAAACAAGAGGATTTGGTAAGGATTTTCAGTGCGGCTCAGGATCTCTTGTTGGCG
GGAGATTTCGACAATCAATCCAAACTCAGTGCCTTCTTCAAGGAGATTACCTCAGGCCACCTCGATAAGGCCTTGAGTAA
CACGGTTTTGGTCATTGATGGTTTTACGCGTTTCTCAGCTGAGGAGGAAGCACTGGTTGCACTCTTGAATGATAAGTGCC
ACCAGATTGTCATTGGGACCTATGCCAGTCAAAAAGCTTATAAGGCTAACTTTGTTTATGGCAATGTTTATCAGGCTTCA
GTGGATTTTCTGAAGACTTTGGCTCAGACTTATAAGGTGACACCTGACTACGTGACGACAGACAAAGAGGGCAATCCTTC
TTTTGCACGTATTAGTCGTCTTTTAGAAAGCCGTCATGATTTTAGTACGGTGGATGAGAAGGTTACTGATCAAGACAAGC
AAGCCTTGCAGGTCTGGGAAGTGGTCAACCAAAAGGAAGAAGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCG
GATGGCAAGCGCTACAAGGATATCTTGGTCCTGCTTGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGTCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGTAAGGAAGAAACCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTAG
AGCGTATCAAGCGCTATAATTATCGTGCCGAGGATTTGCTTAATCTCGTAAAATCAGGTCTCTATGGCGGTTTTACTCAA
GAGGACTTAGACCTTTTTGAGTATTATGTCAATTTTGCAGATATCAAGGGGCGTCACAAGTTCTTGTCTGATTTTACGGC
CAATAGTCGTGATAAGTATGATTTAGACCAGCTTAATGCCTTGCGCTCACAACTGGTAGAGCCTTTGGACAAGTTACTTA
ACAGTCGCAAACAAAAGGGTTCTAGTCTGCTTAAGAAACTTGCGGTCTTTTTAGGGACTGTACAAGTGCCAAATCAGATG
GCTGCTTTGACTGTCAAGGCCAGTGAAGCTGAAAAAGAACAGAATGAACAGGTCTGGAAGTCTTTCACCCAACTCTTGGA
GCAGGTTGAGACTATTTTTGGGGAAGAAACACTGTCAGTGGATGACTTTTTGTCAATTTTGCGTTCGGGAATGTTGGCTT
GTGATTACCGTACGGTCCCAGCCACTGTTGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACATTCAGCTCCT
TATGTTTTTGCCTTAGGCATGACTCAGTCGCATTTTCCAAAGGTTGGGCAAAATAAGAGTCTCCTGTCTGATGAGGAGCG
TAGTCGTATCAATGAGGCGACGGATGAGCATAGGAGTTTGGATATTGTTACGCAGAGTAATAGTCAGCGGGGGCATTTTG
TGGCTATGTCGCTTTTCAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACGCAGGATGAC
ATGTCGGTTTATTTGAAGGAACTTCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
TGACCAGATTGGGAACTACAAGGACCTCCTATCGACTGTCATTGCCCTTAACAGTAGCCATCTAGATGCTGATTTGGACA
AGGAAACGCAGACGTTTTGGTCAGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGACCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACGACCAAGGTGGATGATCAGGTCATGCAGCTGGTCTTTCCGGGGGAAGAACCACTAAAATT
ATCAGCTTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGCCTTGAAGAGTTGG
AGTCCATCCATCCAGATGCCCGACACCACGGGACTTATTTACACCGTGTCTTTGAGCGTGTGATGGGTGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCCTTTGAAATTCTCTATACCGAGGA
CCAAGAGAGTTGCTTGTCTCGTCAGATTTTGGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGACAATGCGGCCG
TTAAAGTTGAGCGTGAGGAAGCCAAGTTTGACTTGCTTTTAGCAAATAGCATCAAAATTACAGGGATTATTGACCGTGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAATCAGGTAAAAATGTCTTTGACATTCAGAAATTCTACAA
TGGCCTCAGTCCGCAATTGGTGACCTACCTGGAGGCCCTTCGACAAACCTATAAGGTCGATGCTGACCAGCTTTTTGGTG
CCATGTATCTCCACATGCAGGATCCACAACTTAACCTAGTCCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTAATAAG
GAATTGACCTATAAGGGGCTCTTTGTAGCTTCAGAAACAGAGCATCTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGACAAGGAGGACCTAGAAACCTTGTTAGACTACAATATTAAGCTCTTTACAGATGCTGCTGAGATTATTCGAA
GTGGGAATTTTGCGGTCAATCCTTATACCGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGGCTATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTGCGTTTACCAAGTAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGACAAAAGACGAGGACAAGAACCAGATGCAAGTTGCTGAAAATATCATCCCCTTTCTTGTCACCAATCAAGCTGTGA
CAGCAGACAAAAAAGATCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.526

98.463

0.429