Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HT135_RS14610 Genome accession   NZ_CP054584
Coordinates   2824894..2827254 (-) Length   786 a.a.
NCBI ID   WP_106020186.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2819894..2832254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS14590 (HT135_14585) - 2819973..2821526 (+) 1554 WP_106020185.1 SH3 domain-containing protein -
  HT135_RS14595 (HT135_14590) dtd 2821551..2821991 (-) 441 WP_010335121.1 D-aminoacyl-tRNA deacylase -
  HT135_RS14600 (HT135_14595) relA 2822004..2824208 (-) 2205 WP_010335122.1 GTP diphosphokinase -
  HT135_RS14605 (HT135_14600) - 2824376..2824888 (-) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  HT135_RS14610 (HT135_14605) recJ 2824894..2827254 (-) 2361 WP_106020186.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HT135_RS14615 (HT135_14610) - 2827321..2827656 (-) 336 WP_024122318.1 LapA family protein -
  HT135_RS14620 (HT135_14615) - 2827732..2828229 (-) 498 WP_024122319.1 cation:proton antiporter regulatory subunit -
  HT135_RS14625 (HT135_14620) secDF 2828389..2830602 (-) 2214 WP_024122320.1 protein translocase subunit SecDF -
  HT135_RS14630 (HT135_14625) - 2830640..2830936 (-) 297 WP_024122321.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88405.00 Da        Isoelectric Point: 4.9812

>NTDB_id=453731 HT135_RS14610 WP_106020186.1 2824894..2827254(-) (recJ) [Bacillus halotolerans strain KKD1]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDTAENARLFLHTKDTEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPNRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTNRLGLKELIKLSGGEIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADNTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLDCVGFNKGELEENIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTVSALPSDKRVIVSFKEETKVLLQSEDFRHDVHVISSEDQAKACELDNAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGTFDLNKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=453731 HT135_RS14610 WP_106020186.1 2824894..2827254(-) (recJ) [Bacillus halotolerans strain KKD1]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAACGCGAGGCTGTTTTTACATACAAAGG
ATACCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTAGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCGGCGCAAGTTGATTTTTATATACCTAACCGGTTTAAAGAAGGCTACGGCCCTAATGAACAGGCATTTCGCTCGATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAAGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCGGAGCTTCCGGATGTCCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGCGTGGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
TGCCAGATGAACTTCTTGACCTGGCGGCAATCGGCACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAACCGGCTTGGCTTAAAAGAACTGATTAAGCTCTCAGGCGGAGAAAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGACTGAACGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATTTGCTGATGTCAGAGGACCCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTAACCAAACTGCGATTGT
CGTGGCAAAAGCAGGGTGGAATCCCGGAGTCGTCGGAATTGTAGCTTCAAAGCTTGTAGACCGTTTTTATCGCCCGGCCA
TTGTCCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATCAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAAGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACAATACGCTTACAGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTTTGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCCCCCTTCGGCATGCTGAAT
CCGAAACCGCATGTGATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCCTCCCAGCTTGACTGCGTCGGTTTCAATAAAGGCGAGCTTGAGGAAAATATTGTGCCCGGTT
CAAAAATTTCGATTGTTGGTGAAATGTCGATCAACGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATACGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACCAAAGTGCTTCTTCAGTCTGAAGATTTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATGTGAACTTGACAATGCATATATTGTATTACTGGATTCTCCGCCTTCGCTGGACATG
CTCGCACGTTTGCTGGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCACTTTTGACTTGAATAAACACGGCT
CAGAGCTTGCGAGGCATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTAATAAGCGGAGCGAAAAAACGCGATTTAACAGACTCGCAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

93.257

100

0.933