Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HT135_RS08895 Genome accession   NZ_CP054584
Coordinates   1728114..1728893 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus halotolerans strain KKD1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1723114..1733893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS08875 (HT135_08875) trmFO 1723808..1725115 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HT135_RS08880 (HT135_08880) xerC 1725183..1726097 (+) 915 WP_106020696.1 tyrosine recombinase XerC -
  HT135_RS08885 (HT135_08885) clpQ 1726110..1726655 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  HT135_RS08890 (HT135_08890) hslU 1726672..1728075 (+) 1404 WP_024121393.1 HslU--HslV peptidase ATPase subunit -
  HT135_RS08895 (HT135_08895) codY 1728114..1728893 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HT135_RS08900 (HT135_08900) flgB 1729273..1729662 (+) 390 WP_010334244.1 flagellar basal body rod protein FlgB -
  HT135_RS08905 (HT135_08905) flgC 1729662..1730114 (+) 453 WP_044155899.1 flagellar basal body rod protein FlgC -
  HT135_RS08910 (HT135_08910) fliE 1730125..1730445 (+) 321 WP_024121395.1 flagellar hook-basal body complex protein FliE -
  HT135_RS08915 (HT135_08915) fliF 1730491..1732101 (+) 1611 WP_024121396.1 flagellar basal-body MS-ring/collar protein FliF -
  HT135_RS08920 (HT135_08920) fliG 1732114..1733130 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  HT135_RS08925 (HT135_08925) fliH 1733123..1733875 (+) 753 WP_106020699.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=453709 HT135_RS08895 WP_003220850.1 1728114..1728893(+) (codY) [Bacillus halotolerans strain KKD1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=453709 HT135_RS08895 WP_003220850.1 1728114..1728893(+) (codY) [Bacillus halotolerans strain KKD1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTGCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAAGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAACAGTGAGTATACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATACTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTAGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTCAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467