Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HT135_RS08865 Genome accession   NZ_CP054584
Coordinates   1720567..1721466 (+) Length   299 a.a.
NCBI ID   WP_106020694.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1715567..1726466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS08845 (HT135_08845) - 1716236..1717966 (+) 1731 WP_106020690.1 hypothetical protein -
  HT135_RS08850 (HT135_08850) - 1717963..1718244 (+) 282 WP_106020692.1 FlhB-like flagellar biosynthesis protein -
  HT135_RS08855 (HT135_08855) sucC 1718418..1719575 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  HT135_RS08860 (HT135_08860) sucD 1719604..1720506 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  HT135_RS08865 (HT135_08865) dprA 1720567..1721466 (+) 900 WP_106020694.1 DNA-processing protein DprA Machinery gene
  HT135_RS08870 (HT135_08870) topA 1721657..1723732 (+) 2076 WP_044155905.1 type I DNA topoisomerase -
  HT135_RS08875 (HT135_08875) trmFO 1723808..1725115 (+) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HT135_RS08880 (HT135_08880) xerC 1725183..1726097 (+) 915 WP_106020696.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32975.22 Da        Isoelectric Point: 9.3931

>NTDB_id=453708 HT135_RS08865 WP_106020694.1 1720567..1721466(+) (dprA) [Bacillus halotolerans strain KKD1]
MDQAAACLITCRINQLLSPSLLLKWWKADPSMSLSNPSCALETASRGKVRAAALKNKIEEQYPKLQHLLSVYQQQGIKVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=453708 HT135_RS08865 WP_106020694.1 1720567..1721466(+) (dprA) [Bacillus halotolerans strain KKD1]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTATCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGTCAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCAC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCAACAGCAAGGCATTAAAGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCCTATGGAATCCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTAGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCGGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.612

100

0.836