Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HT135_RS01955 Genome accession   NZ_CP054584
Coordinates   371350..371787 (-) Length   145 a.a.
NCBI ID   WP_106021056.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 366350..376787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS01925 (HT135_01925) - 366482..367618 (+) 1137 WP_106021064.1 zinc-dependent alcohol dehydrogenase -
  HT135_RS01930 (HT135_01930) - 367661..368086 (+) 426 WP_164848148.1 RDD family protein -
  HT135_RS01935 (HT135_01935) - 368168..368503 (+) 336 WP_101863959.1 YckD family protein -
  HT135_RS01940 (HT135_01940) - 368655..369383 (+) 729 WP_106021062.1 AAA family ATPase -
  HT135_RS01945 (HT135_01945) - 369456..370889 (+) 1434 WP_106021060.1 glycoside hydrolase family 1 protein -
  HT135_RS01950 (HT135_01950) nin/comJ 370925..371323 (-) 399 WP_106021058.1 competence protein ComJ Regulator
  HT135_RS01955 (HT135_01955) nucA/comI 371350..371787 (-) 438 WP_106021056.1 DNA-entry nuclease Machinery gene
  HT135_RS01960 (HT135_01960) tlpC 371972..373696 (-) 1725 WP_106021054.1 methyl-accepting chemotaxis protein TlpC -
  HT135_RS01965 (HT135_01965) hxlB 373810..374367 (-) 558 WP_106021052.1 6-phospho-3-hexuloisomerase -
  HT135_RS01970 (HT135_01970) hxlA 374373..375005 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  HT135_RS01975 (HT135_01975) hxlR 375237..375599 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16001.73 Da        Isoelectric Point: 4.1966

>NTDB_id=453683 HT135_RS01955 WP_106021056.1 371350..371787(-) (nucA/comI) [Bacillus halotolerans strain KKD1]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSDVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPVDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=453683 HT135_RS01955 WP_106021056.1 371350..371787(-) (nucA/comI) [Bacillus halotolerans strain KKD1]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGTTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

91.667

99.31

0.91