Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   HT135_RS01950 Genome accession   NZ_CP054584
Coordinates   370925..371323 (-) Length   132 a.a.
NCBI ID   WP_106021058.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KKD1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 365925..376323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS01925 (HT135_01925) - 366482..367618 (+) 1137 WP_106021064.1 zinc-dependent alcohol dehydrogenase -
  HT135_RS01930 (HT135_01930) - 367661..368086 (+) 426 WP_164848148.1 RDD family protein -
  HT135_RS01935 (HT135_01935) - 368168..368503 (+) 336 WP_101863959.1 YckD family protein -
  HT135_RS01940 (HT135_01940) - 368655..369383 (+) 729 WP_106021062.1 AAA family ATPase -
  HT135_RS01945 (HT135_01945) - 369456..370889 (+) 1434 WP_106021060.1 glycoside hydrolase family 1 protein -
  HT135_RS01950 (HT135_01950) nin/comJ 370925..371323 (-) 399 WP_106021058.1 competence protein ComJ Regulator
  HT135_RS01955 (HT135_01955) nucA/comI 371350..371787 (-) 438 WP_106021056.1 DNA-entry nuclease Machinery gene
  HT135_RS01960 (HT135_01960) tlpC 371972..373696 (-) 1725 WP_106021054.1 methyl-accepting chemotaxis protein TlpC -
  HT135_RS01965 (HT135_01965) hxlB 373810..374367 (-) 558 WP_106021052.1 6-phospho-3-hexuloisomerase -
  HT135_RS01970 (HT135_01970) hxlA 374373..375005 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  HT135_RS01975 (HT135_01975) hxlR 375237..375599 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14958.90 Da        Isoelectric Point: 4.6250

>NTDB_id=453682 HT135_RS01950 WP_106021058.1 370925..371323(-) (nin/comJ) [Bacillus halotolerans strain KKD1]
MIKSWKPQELTISYHQFTVFQKGSAPPVIDWTDEAIEKGYAEADEAISFEAQRNSKVYILLRLNSSETVASYEKKVTVPF
HVTKDGIEVESIMSKRLSFDLPKGDYQFTCYTVPAELSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=453682 HT135_RS01950 WP_106021058.1 370925..371323(-) (nin/comJ) [Bacillus halotolerans strain KKD1]
TTGATCAAATCATGGAAGCCGCAAGAACTGACGATTTCATATCATCAATTTACTGTATTTCAAAAGGGTTCCGCACCGCC
AGTCATCGATTGGACAGATGAAGCAATTGAAAAAGGATATGCGGAAGCGGACGAAGCCATTTCGTTTGAGGCACAGCGCA
ATTCAAAGGTATATATTCTTTTGCGACTTAACAGTTCAGAAACAGTTGCATCCTACGAAAAAAAAGTGACTGTTCCTTTT
CACGTCACAAAAGACGGAATTGAAGTTGAAAGCATCATGTCCAAGAGGCTGTCCTTTGACCTTCCTAAAGGAGACTATCA
ATTCACATGCTACACTGTGCCGGCTGAGCTGTCAGATCTGCACGCTGACACTTATATCATTGATGCTGTTTCCGTCTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

86.364

100

0.864