Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   I6H73_RS00335 Genome accession   NZ_CP066073
Coordinates   53799..54044 (+) Length   81 a.a.
NCBI ID   WP_003058569.1    Uniprot ID   A0ABU0A7C2
Organism   Streptococcus dysgalactiae strain FDAARGOS_1016     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48799..59044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H73_RS00300 (I6H73_00300) - 50184..50612 (+) 429 WP_003058584.1 DUF1366 domain-containing protein -
  I6H73_RS00305 (I6H73_00305) - 50578..50805 (+) 228 WP_037588167.1 hypothetical protein -
  I6H73_RS00310 (I6H73_00310) - 50813..51280 (+) 468 WP_003058491.1 phage holin family protein -
  I6H73_RS00315 (I6H73_00315) - 51273..51608 (+) 336 WP_003058565.1 phage holin -
  I6H73_RS00320 (I6H73_00320) - 51610..53055 (+) 1446 WP_003058531.1 peptidoglycan amidohydrolase family protein -
  I6H73_RS00325 (I6H73_00325) prx 53193..53384 (+) 192 WP_003058494.1 hypothetical protein Regulator
  I6H73_RS00330 (I6H73_00330) comGD 53399..53791 (+) 393 WP_003058533.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6H73_RS00335 (I6H73_00335) comGE 53799..54044 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6H73_RS00340 (I6H73_00340) comGF 54025..54465 (+) 441 WP_003058520.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6H73_RS00345 (I6H73_00345) comGG 54488..54817 (+) 330 WP_003058539.1 competence type IV pilus minor pilin ComGG -
  I6H73_RS00350 (I6H73_00350) comGH 54880..55833 (+) 954 WP_003058509.1 class I SAM-dependent methyltransferase Machinery gene
  I6H73_RS00355 (I6H73_00355) - 55892..57088 (+) 1197 WP_003058485.1 acetate kinase -
  I6H73_RS00360 (I6H73_00360) - 57394..57600 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  I6H73_RS00365 (I6H73_00365) - 57703..58383 (+) 681 WP_003058487.1 type II CAAX endopeptidase family protein -
  I6H73_RS00370 (I6H73_00370) - 58401..58838 (+) 438 WP_003058498.1 hypothetical protein -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 9280.82 Da        Isoelectric Point: 9.6222

>NTDB_id=453614 I6H73_RS00335 WP_003058569.1 53799..54044(+) (comGE) [Streptococcus dysgalactiae strain FDAARGOS_1016]
MATGLLVAIVILVLTSLEQSQTRLTYYRSQQEKLNLALMAVQTGQASLNMNDYRLTVLRTEKTLIVRDQEGEVIRIEKKD
R

Nucleotide


Download         Length: 246 bp        

>NTDB_id=453614 I6H73_RS00335 WP_003058569.1 53799..54044(+) (comGE) [Streptococcus dysgalactiae strain FDAARGOS_1016]
ATGGCAACAGGACTCCTCGTAGCTATTGTCATACTGGTTCTAACAAGTTTGGAGCAAAGTCAGACAAGGTTGACATATTA
TCGCAGCCAACAAGAAAAGCTCAACCTAGCTCTGATGGCAGTACAAACTGGTCAAGCGTCTCTCAATATGAATGATTATC
GTCTGACGGTTTTACGCACAGAAAAAACACTTATCGTTAGGGATCAGGAAGGAGAAGTTATTAGAATTGAAAAAAAGGAC
AGGTAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(2-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

41.772

97.531

0.407
  comGE Streptococcus mutans UA159

41.772

97.531

0.407