Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HSZ50_RS11540 Genome accession   NZ_CP054575
Coordinates   2324974..2325222 (-) Length   82 a.a.
NCBI ID   WP_047502888.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-050     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2319974..2330222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ50_RS11525 (HSZ50_11535) - 2321565..2322629 (+) 1065 WP_011303810.1 alcohol dehydrogenase catalytic domain-containing protein -
  HSZ50_RS11530 (HSZ50_11540) - 2322656..2323897 (+) 1242 WP_011303811.1 MFS transporter -
  HSZ50_RS11535 (HSZ50_11545) - 2323937..2324719 (+) 783 WP_069794417.1 DeoR/GlpR family DNA-binding transcription regulator -
  HSZ50_RS11540 (HSZ50_11550) rcrQ 2324974..2325222 (-) 249 WP_047502888.1 hypothetical protein Regulator
  HSZ50_RS11545 (HSZ50_11555) - 2325441..2326292 (-) 852 WP_241158933.1 sugar kinase -
  HSZ50_RS11550 (HSZ50_11560) eda 2326296..2326912 (-) 617 Protein_2262 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
  HSZ50_RS11555 (HSZ50_11565) - 2327050..2327994 (+) 945 WP_011303815.1 LacI family DNA-binding transcriptional regulator -
  HSZ50_RS11560 (HSZ50_11570) - 2328841..2329716 (-) 876 WP_002484126.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 82 a.a.        Molecular weight: 9527.83 Da        Isoelectric Point: 6.0673

>NTDB_id=453616 HSZ50_RS11540 WP_047502888.1 2324974..2325222(-) (rcrQ) [Staphylococcus saprophyticus strain UTI-050]
MFSTSALDIETENKIQKAFKKLSEHRTSLIIAHRLSTIKDVDRIIFIKDGQILEEGSHDVLMQHDGQYKQLYLSQFSDVE
TF

Nucleotide


Download         Length: 249 bp        

>NTDB_id=453616 HSZ50_RS11540 WP_047502888.1 2324974..2325222(-) (rcrQ) [Staphylococcus saprophyticus strain UTI-050]
TTGTTTTCGACGAGTGCGCTAGATATTGAAACAGAAAATAAAATTCAAAAAGCGTTTAAAAAACTTTCAGAACACAGAAC
GTCTTTAATTATTGCACATCGATTATCGACGATTAAAGATGTCGACCGTATTATCTTTATTAAAGATGGTCAAATTTTAG
AAGAAGGAAGTCATGATGTATTAATGCAGCATGATGGTCAATATAAACAACTTTACTTATCTCAATTCTCAGATGTTGAA
ACGTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.632

92.683

0.488