Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FOC67_RS15995 Genome accession   NZ_CP054572
Coordinates   3434646..3435281 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas sp. FDAARGOS_761     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3429646..3440281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC67_RS15965 (FOC67_15965) murB 3430744..3431763 (-) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -
  FOC67_RS15970 (FOC67_15970) - 3431760..3432224 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  FOC67_RS15975 (FOC67_15975) kdsB 3432224..3432988 (-) 765 WP_009313830.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FOC67_RS15980 (FOC67_15980) - 3432988..3433173 (-) 186 WP_003091157.1 Trm112 family protein -
  FOC67_RS15985 (FOC67_15985) lpxK 3433211..3434209 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  FOC67_RS15990 (FOC67_15990) - 3434209..3434649 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  FOC67_RS15995 (FOC67_15995) exbB 3434646..3435281 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FOC67_RS16000 (FOC67_16000) comA 3435354..3437579 (-) 2226 WP_009313829.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FOC67_RS16005 (FOC67_16005) - 3437710..3438243 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  FOC67_RS16010 (FOC67_16010) - 3438331..3439575 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=453566 FOC67_RS15995 WP_003091163.1 3434646..3435281(-) (exbB) [Pseudomonas sp. FDAARGOS_761]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=453566 FOC67_RS15995 WP_003091163.1 3434646..3435281(-) (exbB) [Pseudomonas sp. FDAARGOS_761]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81