Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   I6H74_RS01740 Genome accession   NZ_CP066069
Coordinates   324516..325622 (-) Length   368 a.a.
NCBI ID   WP_115257083.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 319516..330622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS01725 (I6H74_01720) guaB 320393..321874 (+) 1482 WP_115257086.1 IMP dehydrogenase -
  I6H74_RS01730 (I6H74_01725) - 322086..322949 (+) 864 WP_115257085.1 GRP family sugar transporter -
  I6H74_RS01735 (I6H74_01730) - 322993..324384 (-) 1392 WP_115257084.1 IS1182 family transposase -
  I6H74_RS01740 (I6H74_01735) recF 324516..325622 (-) 1107 WP_115257083.1 DNA replication/repair protein RecF Machinery gene
  I6H74_RS01745 (I6H74_01740) yaaA 325624..326037 (-) 414 WP_003055132.1 S4 domain-containing protein YaaA -
  I6H74_RS01750 (I6H74_01745) - 326346..327590 (+) 1245 WP_015017518.1 pitrilysin family protein -
  I6H74_RS01755 (I6H74_01750) - 327592..328875 (+) 1284 WP_012767684.1 pitrilysin family protein -
  I6H74_RS01760 (I6H74_01755) - 328925..329956 (+) 1032 WP_003061371.1 helix-turn-helix domain-containing protein -
  I6H74_RS01765 (I6H74_01760) pgsA 329970..330512 (+) 543 WP_003062173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41926.80 Da        Isoelectric Point: 7.8298

>NTDB_id=453523 I6H74_RS01740 WP_115257083.1 324516..325622(-) (recF) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRVSGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDKRTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTIQVDSEIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=453523 I6H74_RS01740 WP_115257083.1 324516..325622(-) (recF) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCATCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTGTTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGCGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTACTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGGTCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAACCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAGCAAATTGATGCGGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAAC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCATTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAATCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAGAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGTGTGGGCCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGAATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCATTCAAGTTGATTCTGAAATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.912

98.913

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465