Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FOC72_RS05000 Genome accession   NZ_CP054570
Coordinates   1013229..1014458 (-) Length   409 a.a.
NCBI ID   WP_002895582.1    Uniprot ID   A0A3R9G2C7
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1008229..1019458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS04970 (FOC72_04970) - 1008547..1009176 (-) 630 WP_002895573.1 hypothetical protein -
  FOC72_RS04975 (FOC72_04975) - 1009283..1009624 (-) 342 WP_002895574.1 hypothetical protein -
  FOC72_RS04980 (FOC72_04980) - 1009862..1010659 (-) 798 WP_002895576.1 formate/nitrite transporter family protein -
  FOC72_RS04985 (FOC72_04985) mmuM 1010774..1011721 (-) 948 WP_002895577.1 homocysteine S-methyltransferase -
  FOC72_RS04990 (FOC72_04990) - 1011785..1012483 (-) 699 WP_002895579.1 glucosaminidase domain-containing protein -
  FOC72_RS04995 (FOC72_04995) yihA 1012631..1013218 (-) 588 WP_002895581.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FOC72_RS05000 (FOC72_05000) clpX 1013229..1014458 (-) 1230 WP_002895582.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FOC72_RS05005 (FOC72_05005) - 1014683..1015195 (-) 513 WP_002895585.1 dihydrofolate reductase -
  FOC72_RS05010 (FOC72_05010) - 1015320..1016159 (-) 840 WP_002895586.1 thymidylate synthase -
  FOC72_RS05015 (FOC72_05015) - 1016264..1017223 (-) 960 WP_002895587.1 ROK family glucokinase -
  FOC72_RS05020 (FOC72_05020) - 1017336..1017746 (-) 411 WP_002895588.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45617.05 Da        Isoelectric Point: 4.3984

>NTDB_id=453495 FOC72_RS05000 WP_002895582.1 1013229..1014458(-) (clpX) [Streptococcus sanguinis strain FDAARGOS_770]
MPTSRNDDMMVFCSFCGKNQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPQELLNILNHYVIGQDR
AKRALAVAVYNHYKRINYHDSREEEDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEDSSYMQEIISEDVQKFGIIPELIGRLPVFAALEQLTVDDLVRI
LKEPRNALIKQYQALLSYDDVKLEFDEDALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKLVRITKEAVDG
TDKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=453495 FOC72_RS05000 WP_002895582.1 1013229..1014458(-) (clpX) [Streptococcus sanguinis strain FDAARGOS_770]
ATGCCTACAAGTCGTAATGATGATATGATGGTTTTTTGTTCTTTCTGTGGGAAGAACCAAGATGAGGTGCAGAAAATTAT
TGCTGGTAACAATGCCTTCATCTGTAATGAATGTGTGGAACTGGCACAGGAGATCATCCGTGAAGAGTTGGCCGAGGAAG
TGCTGGCAGATCTGTCTGAGGTACCAAAACCTCAGGAGCTGCTGAACATCTTGAACCACTATGTTATCGGGCAAGACCGA
GCTAAGCGTGCCTTGGCAGTAGCGGTCTATAATCACTACAAGCGTATTAACTACCATGACAGCCGTGAAGAAGAAGATGT
GGAACTGCAAAAGTCAAATATTTTGATGATTGGCCCAACCGGATCTGGTAAAACCTTCTTGGCGCAGACTCTGGCTCGCA
GCCTCAATGTGCCTTTCGCCATTGCGGACGCAACAGCTTTGACTGAAGCTGGTTATGTCGGAGAAGATGTTGAAAATATC
CTGCTCAAGCTTTTGCAGGCGGCTGACTTTAATATTGAGCGTGCGGAACGTGGCATTATCTATGTCGATGAGATTGACAA
GATTGCTAAGAAAGGTGAGAACGTCTCAATTACTCGTGATGTTTCAGGTGAAGGGGTTCAACAAGCTCTGCTGAAGATTA
TCGAAGGAACAGTAGCGAGTGTACCGCCGCAAGGTGGACGCAAGCATCCCCAGCAGGAAATGATTCAAGTTGATACTAAG
AACATTCTCTTCATCGTTGGCGGTGCTTTTGACGGTATCGAAGAAATCGTAAAACAGCGTCTGGGTGAGAAAATCATTGG
TTTCGGTCAGAACAACCGAGCAATCGACGAAGATAGTTCCTACATGCAGGAAATTATCTCAGAAGACGTTCAAAAGTTTG
GGATTATTCCTGAGTTGATTGGCCGTTTGCCTGTTTTTGCTGCTCTGGAGCAGCTGACAGTTGATGATTTGGTCCGGATT
CTGAAAGAGCCTAGAAATGCACTTATCAAGCAATATCAGGCACTTCTATCTTATGATGATGTTAAACTTGAATTTGACGA
GGATGCTCTGCAGGAGATTGCCAATAAAGCGATTGAACGTAAAACAGGTGCTCGCGGTCTTCGCTCTATCATTGAAGAAA
CTATGATGGATGTCATGTTTGAAGTTCCGAGTCAGGAAAATGTCAAACTTGTCCGCATTACCAAAGAAGCAGTAGATGGA
ACAGATAAGCCTATTCTAGAAACTGCCTAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9G2C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

85.819

100

0.858
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.606

98.044

0.565