Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6H78_RS06055 Genome accession   NZ_CP066059
Coordinates   1254907..1255500 (+) Length   197 a.a.
NCBI ID   WP_000273410.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1249907..1260500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS06035 (I6H78_06035) - 1250942..1251400 (-) 459 WP_198459120.1 DUF3021 domain-containing protein -
  I6H78_RS06040 (I6H78_06040) - 1251397..1251837 (-) 441 WP_198459121.1 LytTR family DNA-binding domain-containing protein -
  I6H78_RS06045 (I6H78_06045) hexB 1252151..1254100 (+) 1950 WP_198459122.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6H78_RS06050 (I6H78_06050) - 1254251..1254748 (-) 498 WP_198460233.1 helix-turn-helix domain-containing protein -
  I6H78_RS06055 (I6H78_06055) ruvA 1254907..1255500 (+) 594 WP_000273410.1 Holliday junction branch migration protein RuvA Machinery gene
  I6H78_RS06060 (I6H78_06060) - 1255510..1256076 (+) 567 WP_198459123.1 DNA-3-methyladenine glycosylase I -
  I6H78_RS06065 (I6H78_06065) - 1256156..1256419 (-) 264 WP_000166112.1 SemiSWEET family transporter -
  I6H78_RS06070 (I6H78_06070) - 1256525..1257559 (-) 1035 WP_198460234.1 S66 peptidase family protein -
  I6H78_RS06075 (I6H78_06075) - 1257834..1258181 (-) 348 WP_198459124.1 hypothetical protein -
  I6H78_RS06080 (I6H78_06080) - 1258197..1258874 (-) 678 WP_198459125.1 DUF1129 domain-containing protein -
  I6H78_RS06085 (I6H78_06085) - 1258886..1259830 (-) 945 Protein_1179 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21724.19 Da        Isoelectric Point: 6.2573

>NTDB_id=453472 I6H78_RS06055 WP_000273410.1 1254907..1255500(+) (ruvA) [Streptococcus oralis strain FDAARGOS_1021]
MYEYLKGIITKITAKYIVLEANGIGYILHVANPYAYSGQVNQETQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVASDDLPAKVAVQTSAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=453472 I6H78_RS06055 WP_000273410.1 1254907..1255500(+) (ruvA) [Streptococcus oralis strain FDAARGOS_1021]
ATGTACGAATATCTAAAAGGAATCATTACCAAAATCACTGCTAAATACATCGTCCTAGAGGCAAATGGTATCGGTTATAT
CTTACATGTAGCCAATCCCTATGCTTACTCAGGTCAGGTCAATCAAGAGACCCAGATTTATGTGCACCAAGTTGTCCGTG
AGGACGCGCATCTGCTCTATGGCTTTCGCTCAGAAGATGAGAAAAAACTCTTCCTCAGTCTGATTTCGGTCTCAGGTATT
GGACCTGTATCAGCTCTTGCTATTATCGCAGCCGATGACAATGCTGGCTTGGTTCAAGCAATCGAGACTAAGAACATTAC
CTACTTGACTAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAACAGATGGTGCTAGACTTGGAAGGTAAGGTAGTTGTGG
CTAGCGATGACCTTCCTGCCAAGGTGGCAGTGCAAACCAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAAGCCATG
TTGGCACTGGGCTACAAGGCAACCGAGCTTAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAGATGTTGGTAAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

97.462

100

0.975
  ruvA Streptococcus pneumoniae R6

96.954

100

0.97
  ruvA Streptococcus pneumoniae D39

96.954

100

0.97
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.777

100

0.426