Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6H78_RS03645 Genome accession   NZ_CP066059
Coordinates   756639..759008 (+) Length   789 a.a.
NCBI ID   WP_198460103.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 751639..764008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS03620 (I6H78_03620) mutS/mutS2 751639..753975 (-) 2337 WP_198460101.1 endonuclease MutS2 Machinery gene
  I6H78_RS03625 (I6H78_03625) - 754076..754624 (-) 549 WP_049484262.1 CvpA family protein -
  I6H78_RS03630 (I6H78_03630) zapA 754621..754923 (-) 303 WP_000002028.1 cell division protein ZapA -
  I6H78_RS03635 (I6H78_03635) rnhC 755010..755891 (+) 882 WP_198460102.1 ribonuclease HIII -
  I6H78_RS03640 (I6H78_03640) lepB 755895..756509 (+) 615 WP_001083992.1 signal peptidase I -
  I6H78_RS03645 (I6H78_03645) recD/recD2/recDB 756639..759008 (+) 2370 WP_198460103.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6H78_RS03650 (I6H78_03650) tig 759056..760339 (-) 1284 WP_000116504.1 trigger factor -
  I6H78_RS03655 (I6H78_03655) - 760430..761086 (-) 657 WP_198460104.1 DNA alkylation repair protein -
  I6H78_RS03660 (I6H78_03660) vraR 761087..761719 (-) 633 WP_198460105.1 response regulator transcription factor Regulator
  I6H78_RS03665 (I6H78_03665) - 761730..762728 (-) 999 WP_198460106.1 sensor histidine kinase -
  I6H78_RS03670 (I6H78_03670) liaF 762725..763423 (-) 699 WP_198460107.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88433.29 Da        Isoelectric Point: 4.6210

>NTDB_id=453424 I6H78_RS03645 WP_198460103.1 756639..759008(+) (recD/recD2/recDB) [Streptococcus oralis strain FDAARGOS_1021]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDSYGDNTIDEILEHPEKLEGISGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEKTLDIVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELSHLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSHDLETIQKH
IDTVEQELGIQYDSIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLKKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPLIPQTRLERIYRQSEESTIVTLASQIRKGILPADFTQKKADRSYFEIASGHIPATIEKILSAALRSGILARDIQV
LAPMYRGTAGIDAINQLMQDLLNPQQKGQVSFEATQCHYRTGDKVIHLVNDAEVNVFNGDIGYITDLIPGKYTESKQDEI
VIDFDGNEVVYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFSDLIENNIEESKQAFSETATASDSEHSYILTEENWSSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=453424 I6H78_RS03645 WP_198460103.1 756639..759008(+) (recD/recD2/recDB) [Streptococcus oralis strain FDAARGOS_1021]
ATGGAAGTTTATTTTTCAGGCACCATTGAACGGATTATTTTTGAAAATCCCAGTAATTTTTATCGCATTCTCCTCCTAGA
TATTGAAGATACGGACGCAGAGGACTTTGACGATTTTGAAATCATCGTTACAGGAACCATGGCGGACGTGATTGAAGGGG
AAGACTACACTTTTTGGGGGCAAATCGTTCAGCACTCCAAGTATGGGGAACAGCTTCAGATCAGCCGTTATGAACGCGCA
AAACCAACTAGCAAGGGCCTCGTCAAGTACTTTTCCAGCAGCCATTTCAAAGGAATTGGTCTCAAAACGGCCCAAAAAAT
CGTTGATAGCTATGGTGACAATACCATTGATGAAATTCTGGAACATCCTGAAAAGCTAGAAGGCATCTCAGGACTCTCTG
CCAAAAACCGTGAGGCTTTTGTTTCCACTCTTCGTCTTAACTACGGAACCGAGATGGTCTTAGCTAAACTAGCTAACTAC
GGCATTCCCAATAAACTGGCCTTTCAGATTCAAGACTTTTACAAGGAAAAAACGCTGGATATTGTCGAAAACTATCCCTA
CCAACTGGTTGAAGATATCAAAGGATTGGGTTTTACCATTGCTGACCAATTAGCTGCCGAACTAGGTATCGAAAGCCAAG
CTCCTGAACGCTTCCGTGCTGGCCTTGTCCACAGTCTTTTTCAGGGATGTATGGATACGGGCGATACCTATATGGAGGCC
CGAGATTTGCTGGAACAAACCCTGACTCTCCTCGAGTCTTCCCGTCCCGTGGAACTCGATCCCAGCCAAGTAGCTCAGGA
ATTATCTCATTTGATTGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATCTTTGATAATAGCCTCTTTTTCGCTGAAG
AAGGCATCCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAAAAGAGTCATGATTTGGAAACCATTCAAAAGCAT
ATCGATACTGTCGAGCAAGAACTGGGGATTCAGTACGATAGCATTCAAAAACAGGCTATCTGCGACGCTATCCAGAACAA
GGTCTTTATCCTGACAGGTGGACCTGGTACTGGTAAGACGACTGTTATCAATGGGATTATCGCTGTCTATGCCCTGCTTG
AAGGACTCGATCTCAAGAAAAAGAGCAACTTACCTATTCTTCTCGCTGCCCCAACTGGTCGAGCAGCTCGGCGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACACCGCCATTTGGGAATGACGGGGGACGATGATACCAGCCATCTGGAAGA
TTATCTAGATGCCGACTTTATCATTGTAGATGAGTTTTCCATGGTGGATACTTGGCTAGCCAACCAACTCTTCTCCAACA
TCTCTTCTAACAGTAAAATTCTCATCGTGGGTGATAGCGACCAGCTACCTTCTGTCAGTCCTGGACAAGTCCTGGCTGAC
CTGCTCCAGATACCCCTGATTCCGCAGACTCGCTTGGAACGGATTTACCGTCAGAGCGAAGAATCAACTATCGTTACCTT
GGCTAGTCAAATTCGAAAGGGAATCTTGCCAGCTGACTTTACCCAGAAAAAAGCTGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATCCCAGCTACCATTGAGAAAATTCTTAGTGCTGCCCTCAGAAGTGGTATTTTGGCTCGCGATATTCAAGTG
CTAGCGCCTATGTATCGAGGAACTGCTGGCATTGACGCCATCAACCAGCTTATGCAAGACCTGCTCAATCCTCAGCAAAA
AGGACAAGTTAGCTTTGAAGCAACTCAGTGTCACTATCGAACAGGAGACAAGGTCATTCACCTAGTCAACGATGCCGAAG
TCAATGTCTTTAATGGAGACATAGGCTACATCACAGACCTGATTCCTGGAAAATACACTGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAAGTCGTCTACCCACGTAACGAATGGTACAAGATTCGACTAGCCTACGCCATGAGTAT
CCATAAGTCTCAGGGAAGTGAGTTTCCCGTTGTCATCCTGCCCATCACCAGTGCTAGCAAGCGCATGCTAGAGCGAAATC
TCATCTACACAGCCATTACACGGGCCAAGAGCAAGCTCATCCTTCTTGGCGAGTTACAGGCCTTTGACTATGCAGTCAAG
CATATCGGGACTGCTCGCAAGACCTATCTGATTGAACGCTTCAGTGATTTAATTGAAAATAATATTGAAGAAAGTAAACA
AGCCTTCTCTGAAACTGCCACAGCAAGTGACTCTGAACACTCCTACATCCTCACCGAGGAAAACTGGTCTAGCATCCCAG
CCATGATCGGGATTACAGATGCAGACTTAAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(332-519)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.154

95.311

0.402