Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   I6H78_RS00705 Genome accession   NZ_CP066059
Coordinates   151278..154553 (-) Length   1091 a.a.
NCBI ID   WP_198459616.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 146278..159553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS00695 (I6H78_00695) - 146432..147610 (-) 1179 WP_198459614.1 hypothetical protein -
  I6H78_RS00700 (I6H78_00700) rexA 147628..151281 (-) 3654 WP_198459615.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6H78_RS00705 (I6H78_00705) rexB 151278..154553 (-) 3276 WP_198459616.1 ATP-dependent nuclease subunit B Machinery gene
  I6H78_RS00710 (I6H78_00710) - 154660..155079 (-) 420 WP_198459617.1 EVE domain-containing protein -
  I6H78_RS00715 (I6H78_00715) - 155072..155533 (-) 462 WP_198459618.1 MarR family winged helix-turn-helix transcriptional regulator -
  I6H78_RS00720 (I6H78_00720) - 155680..156489 (+) 810 WP_198459619.1 Cof-type HAD-IIB family hydrolase -
  I6H78_RS00725 (I6H78_00725) - 156535..157272 (-) 738 WP_198459620.1 TraX family protein -
  I6H78_RS00730 (I6H78_00730) aguB 157417..158292 (-) 876 WP_198459621.1 N-carbamoylputrescine amidase -
  I6H78_RS00735 (I6H78_00735) aguA 158302..159387 (-) 1086 WP_198459622.1 agmatine deiminase -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124600.36 Da        Isoelectric Point: 5.7038

>NTDB_id=453401 I6H78_RS00705 WP_198459616.1 151278..154553(-) (rexB) [Streptococcus oralis strain FDAARGOS_1021]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPTKTS
LDDIGLGMAFYKCLAELDPKDLRVYGAIKQDPQFIQQLVELYHEMTTAQMSFLDLENLTDEDKRADLLLIFEKVTAYLNH
GQLAQGSQLSHLIEAIENDKVSSDFSQLALVIDGFTRFSAEEERVVDLLHRKGAEIVIGAYASKKAYTSPFTEGNLYQAS
VEFLHHLGAKYQIPAQDCSQTHEKIDSFDKASRLLESTYDFSELALDIDEKDRENLQIWSCLTQKEELELVARSIRQQLH
DNPELSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQDDIDTFEQYLRYLGINGLPAFQQTFTKSHHGKFDLARLNAIRLRVLVPLETLFASRKQKAENLLQKWSIFLKNAALSK
QMQDLTATMETLEQERQAEVWKAFCHALEQFATVFDGSQVSLEDFLALLHSGMTLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLLNENE
SKETAYLQELVSFGFSRTEKKIHQKSLSKDDMGSYHSLLSSLVAYHQQGETSNTEQDLTFVKVLARIMGKKLDQKGLTNP
VIPTNPSSKPLEKETLQALYPADKEFCLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERTLKLPA
ENSFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEILLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDDGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLLAVKSLA
GAVAEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGHFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=453401 I6H78_RS00705 WP_198459616.1 151278..154553(-) (rexB) [Streptococcus oralis strain FDAARGOS_1021]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACTGAAATTTTAACGAGAGAGGCGGAAGAGCTAGTTGCTGCTGG
CAAGCGGGTCTTCTACATCGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGTTTCGCTCAAATGGCTCGTTACCTGGTCTTGAATGATTTGCCGACTAAAACTAGT
CTAGATGACATCGGGCTTGGGATGGCTTTTTATAAGTGCCTTGCGGAACTCGATCCCAAGGACTTACGTGTTTATGGTGC
AATTAAGCAGGATCCTCAATTTATCCAGCAGTTGGTTGAACTTTATCATGAGATGACGACTGCTCAGATGAGCTTTTTGG
ACTTAGAAAATTTGACGGATGAGGACAAGAGAGCAGACTTACTCTTGATTTTTGAGAAAGTAACGGCCTATCTCAATCAT
GGTCAGTTGGCTCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGATAAGGTAAGTAGTGATTTCAGTCA
ACTTGCCTTGGTAATTGACGGATTTACCCGTTTTTCTGCTGAGGAAGAGCGTGTAGTGGATCTACTCCATCGCAAAGGTG
CCGAGATTGTTATTGGTGCCTATGCAAGCAAGAAAGCCTATACCAGTCCGTTCACTGAAGGAAATCTCTACCAAGCCAGT
GTGGAATTCCTCCATCATTTGGGGGCAAAATACCAAATACCTGCTCAGGATTGTTCTCAGACGCATGAGAAGATCGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTACTTATGACTTTTCAGAACTCGCTTTAGATATCGATGAGAAAGACCGTG
AAAATCTGCAAATCTGGTCTTGTTTGACACAAAAGGAAGAGTTGGAGTTGGTAGCCCGCAGCATTCGTCAACAATTACAT
GACAATCCAGAACTGAGTTACAAGCATTTTCGTATTCTCTTAGGAGATGTGGCTTCTTATCAGTTGTCCTTAAAGACCAT
TTTTGACCAGTACCAGATTCCTTTCTATCTTGGTAGAAGTGAATCTATGGCTCACCACCCCTTAACCCAGTATGTCGAAT
CTATTTTGCGTTTGAAACGCTACCGTTTTCGTCAAGAAGATTTGATTAATCTCCTCAGAACTGGTTTGTATACTGACCTT
AGTCAGGATGATATTGATACTTTTGAGCAATATCTCCGCTATCTTGGCATCAATGGGTTGCCAGCTTTTCAGCAGACCTT
CACAAAATCCCACCACGGAAAATTTGATTTGGCACGTTTGAACGCCATTCGTCTGCGAGTTTTGGTACCACTTGAAACCT
TATTTGCCAGTCGGAAGCAAAAAGCTGAAAATCTCTTGCAAAAGTGGAGTATTTTTCTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGATTTGACAGCTACTATGGAAACTCTAGAACAGGAAAGACAAGCTGAAGTTTGGAAAGCCTTTTGTCATGC
TTTAGAACAATTTGCGACGGTTTTTGATGGTTCGCAAGTTAGTCTGGAGGACTTCCTAGCCTTGCTCCACTCAGGGATGA
CTTTATCTCAGTATCGCACTATTCCAGCGACAGTGGACACTGTTCTGGTGCAGAGTTACGATTTGATTGCACCTCTGACC
GCTGACTTTGTCTATGCCATTGGACTCACTCAGGATCATTTGCCAAAAATTGCGCAAAACACCAGTCTATTGACAGATGA
AGAAAGACAAAGCCTAAACCAAGCTACTGAAGAGGGAGCACAATTACTGATTGCAAGTAGCGAAAATCTCAAGAAAAATC
GCTATACCATGCTTTCTTTAGTCAATGCCGCCCGTAAGCAGTTGGTGTTGTCAGCACCAAGTCTTCTTAATGAAAATGAG
AGCAAGGAAACGGCCTATCTTCAGGAACTGGTGAGTTTTGGATTTAGCCGGACAGAGAAGAAGATTCATCAAAAAAGTCT
GTCTAAGGATGATATGGGTTCTTATCACAGTCTATTGTCTAGTCTAGTTGCCTATCATCAGCAGGGCGAGACAAGTAATA
CTGAGCAAGATTTGACCTTTGTCAAGGTTTTGGCTCGTATCATGGGGAAAAAACTTGACCAAAAAGGTCTTACAAATCCA
GTTATCCCAACTAATCCAAGTAGCAAGCCATTAGAGAAAGAGACCTTGCAGGCTCTCTATCCCGCTGACAAGGAGTTTTG
CCTGTCTACGTCTGGTTTGACGGAGTTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGCCTTCGTCCTGATGCTCGCAGTCATGGGAATTTCTTGCATCGTATTTTTGAACGTACCTTGAAACTCCCTGCT
GAAAATTCCTTTGATCAGCGTTTGGAGCAAGCTATCAAGGAAACCAGCCAAGAACGCGAATTTGAAGCTATTTATCAGGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAATTCTGCTTGATGTTGCGCGGACAACAGGCCACATCCTTCGTCATAATCCAG
CCATTGAAACCATCCAAGAGGAGGCAACATTTGGTGGAAAGGATCAGGCCTTTATTCAATTGGACGATGGTCGCAGTGTC
CATGTGCGAGGCAAGGTTGACCGTATTGACCGCCTGAAAGCTGATGGAGCGCTAGGAGTGGTGGACTACAAGTCTAGTCT
GACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTTAATTCCCAACTGCCAACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGTGCCATGTACTTGGAAATGGCTGAGCCTGTCCAATCTTTATTAGCTGTTAAAAGTCTGGCA
GGAGCAGTAGCAGAAGCCAGCAAATCTATGAAATACCAGGGACTCTTTTTAGAAAAAGAAAGCAGTCACTTGGGCGAATT
TTACAACAAAAACAAGGCTAATCAGCTGACAGACGAGGAATTCCAGCTCTTATTGGACTACAATGCCCATCTTTACAAGA
AGGCAGCTGAGAAGATTTTAGAAGGCCATTTTGCCATTAATCCATACACAGAAAACGGCAGAAGTATTGCCCCGTATGTC
CAGCAACACCAAGCCATCACTGGATTTGAAGCCAATTACCACTTAGGACAAGCCCGTTTCCTAGAGAAGTTGGACTTAGC
TGACGGTAAGCGTCTGGTCGGAGAAAAGCTCAAGCAAGCTTGGTTTGAGAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

90.009

100

0.9