Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   I6H78_RS00700 Genome accession   NZ_CP066059
Coordinates   147628..151281 (-) Length   1217 a.a.
NCBI ID   WP_198459615.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 142628..156281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS00675 (I6H78_00675) - 144010..144789 (-) 780 WP_198459613.1 ribonuclease HII -
  I6H78_RS00680 (I6H78_00680) ylqF 144776..145627 (-) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -
  I6H78_RS00685 (I6H78_00685) mazE 145843..146058 (+) 216 WP_001098942.1 type II toxin-antitoxin system PemI/MazE family antitoxin -
  I6H78_RS00690 (I6H78_00690) - 146042..146398 (+) 357 WP_084851236.1 type II toxin-antitoxin system PemK/MazF family toxin -
  I6H78_RS00695 (I6H78_00695) - 146432..147610 (-) 1179 WP_198459614.1 hypothetical protein -
  I6H78_RS00700 (I6H78_00700) rexA 147628..151281 (-) 3654 WP_198459615.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6H78_RS00705 (I6H78_00705) rexB 151278..154553 (-) 3276 WP_198459616.1 ATP-dependent nuclease subunit B Machinery gene
  I6H78_RS00710 (I6H78_00710) - 154660..155079 (-) 420 WP_198459617.1 EVE domain-containing protein -
  I6H78_RS00715 (I6H78_00715) - 155072..155533 (-) 462 WP_198459618.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140145.65 Da        Isoelectric Point: 5.2624

>NTDB_id=453400 I6H78_RS00700 WP_198459615.1 147628..151281(-) (rexA) [Streptococcus oralis strain FDAARGOS_1021]
MKPISFLTEEEIQKLQEAEASSNKEQKKTAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFT
VKAATELKERLEKKISKQIQESRDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLILK
NEVFHQVFEAHYPGENKETFSRLVKNFAGRGKDERGLRQQVYKIYDFLQSTSSPQKWLNESFLKGFEEADFVIEKDKLTE
QIKQALWDLESFFRYHLDNDAKEFPKAAYLENVQLVLDEIGSLNQESDSQAYRAVLARVVAISKEKNGRALANSSRKADL
KTLADAYNDERKTLFSKLGQLADQITILDYQEHYHEDTWELAKTFQTFMSDFVEAYRERKRLENAFEFADISHYTIEILE
NFPKVREAYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNHKEGKLIL
LKENFRSSSEVLSATNDVFARLMDQEVGEINYDSMHQLVFANTKLTPNPDNKAEFLLYDKDDSGQEEEESQTESKLTGEM
RLVIKEILKLHQEKGVAFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFGFDEDELARLSLQKAEDKIQENLYEKLVNAQKQAASQKNLIHTALAEKLNQFMDILDSWRLYAKVHSLYDLI
WKIYNDRFYYDYVGALLNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLDAQHDLASVAVAPPKDAVELMTIHK
SKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVEAHYPKTIKLSIPSLTYTQNEEELQLASYSEQ
MRLLYVAMTRAERKLYLVGKGSREKLEAKEYPAANNGKLDSNTRLQARNFQDWIWAISKVFAKDNLNFSYRFVGEDQLTR
EAIGELENKSPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELSSVQTPSQIKKFYEPVMDMEGVQIANQTQSP
EKQISFDLPDFSTKEKVTGAEIGSATHELMQRIDLSQQPTLASLAETLKQVQTSPAVRDKINLSKILAFFDTSLGQEILG
NTSHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYKDRIVLFDYKTDRYDEPSQLIDRYRGQLALYGEALSRAYSIKNI
EKYLILLGKDEVQVVKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=453400 I6H78_RS00700 WP_198459615.1 147628..151281(-) (rexA) [Streptococcus oralis strain FDAARGOS_1021]
ATGAAGCCCATTTCCTTTTTAACTGAGGAAGAAATTCAAAAACTGCAAGAAGCAGAAGCGAGTTCGAACAAGGAACAAAA
GAAAACAGCTGAGCAAATCGAAGCCATTTATACCGCAGGGCAAAATATCCTTGTTTCAGCGTCTGCTGGTTCAGGGAAGA
CCTTTGTTATGGCCGAGCGCATTCTGGATCAGTTAGCGCGAGGTGTGGAAATCAGCCAACTCTTTATCTCGACCTTTACC
GTCAAGGCTGCTACTGAACTAAAGGAGCGCTTGGAGAAAAAAATCAGCAAGCAAATCCAAGAAAGTAGAGATGTTGATCT
CAAACAACACTTGGGACGTCAGTTGGCAGATCTGCCAAACGCGGCCATCGGAACTATGGACTCCTTCACACAAAAGTTCC
TCGGTAAACATGGCTATCTGATTGATATTGCACCAAATTTCCGTATTCTACAAAATGAAAGTGAACAGTTAATCCTCAAA
AACGAAGTTTTTCATCAGGTGTTTGAAGCCCATTACCCAGGTGAAAATAAAGAGACCTTTAGTCGTTTGGTGAAAAACTT
TGCTGGGCGTGGCAAGGATGAACGTGGTCTGCGCCAGCAAGTCTACAAAATATATGATTTCCTCCAATCCACCAGCAGTC
CCCAAAAATGGTTGAACGAGTCTTTTCTCAAAGGGTTTGAAGAAGCTGACTTTGTAATTGAAAAAGACAAATTAACTGAG
CAAATCAAGCAGGCGCTTTGGGACTTGGAAAGTTTCTTTCGTTATCATCTGGATAACGATGCCAAGGAGTTTCCAAAAGC
TGCCTATTTAGAAAATGTGCAGCTGGTTCTGGATGAAATTGGCTCCTTAAATCAAGAGTCCGATAGCCAGGCTTATCGAG
CAGTGCTTGCACGTGTTGTTGCCATCTCTAAGGAGAAAAATGGTCGAGCTCTGGCTAACTCTAGTCGTAAGGCCGATTTG
AAGACACTGGCTGATGCCTATAACGATGAAAGAAAGACCCTGTTTTCTAAACTAGGACAACTGGCGGACCAGATAACGAT
TCTCGACTACCAAGAACATTATCATGAAGATACTTGGGAGCTAGCTAAAACCTTCCAAACCTTTATGAGTGATTTTGTGG
AGGCTTATCGTGAGCGTAAACGTTTGGAAAATGCCTTTGAATTCGCTGATATCAGCCATTACACCATTGAGATTTTAGAG
AATTTCCCTAAAGTCCGCGAGGCTTATCAGGAACGATTTCATGAAGTCATGGTCGATGAGTATCAGGATACTAATCACAT
TCAAGAACGGATGCTGGAATTGCTGTCGAATGGTCACAATCGCTTTATGGTGGGAGATATCAAGCAATCCATCTACCGTT
TCCGTCAGGCAGATCCCCAAATTTTCAATGAAAAATTCCAACGCTATGCGCAAAATCATAAAGAAGGCAAGTTGATTCTT
CTTAAGGAAAATTTCCGTAGTAGTTCAGAAGTGCTGTCTGCAACCAATGATGTTTTTGCACGCCTTATGGACCAAGAGGT
CGGCGAAATCAACTATGATAGCATGCACCAGCTTGTTTTTGCCAATACCAAGCTGACTCCTAATCCAGACAACAAGGCAG
AATTTCTCCTCTACGATAAGGACGATAGTGGGCAAGAGGAGGAAGAGAGCCAAACAGAATCGAAACTAACTGGTGAAATG
CGTCTGGTCATCAAGGAAATCTTGAAGCTCCATCAAGAGAAAGGTGTAGCCTTTAAGGAAATTGCCCTTTTGACTTCCAG
TCGCAGTCGAAATGACCAGATTCTACTCGCACTGTCTGAGTACGGAATTCCAGTTAAAACCGACGGTGAGCAAAACAACT
ATCTCCAATCCCTAGAAGTACAAGTCATGCTGGATACGCTTCGTGTCATCCACAATCCCCTGCAAGACTACGCCTTGGTT
GCCCTTATGAAGTCCCCTATGTTTGGTTTTGATGAGGACGAGTTAGCACGTTTGTCCCTTCAGAAAGCAGAGGATAAAAT
CCAAGAAAATCTCTATGAGAAACTGGTCAATGCTCAAAAACAAGCAGCTAGCCAGAAAAACTTAATCCACACCGCTCTAG
CTGAAAAACTAAATCAATTCATGGATATTTTAGATTCTTGGCGCTTGTATGCCAAAGTTCACTCACTCTACGACTTGATT
TGGAAGATTTATAATGACCGTTTTTACTATGACTATGTTGGTGCTTTGCTCAATGGTCCAGCCAGACAAGCCAATCTTTA
TGCCCTAGCTCTGCGAGCAGACCAGTTTGAAAAGAGCAATTTCAAGGGTTTGTCTCGTTTTATCCGTATGATTGATCAGG
TTTTGGATGCCCAGCATGATCTCGCAAGCGTAGCCGTCGCACCACCAAAAGACGCCGTAGAGCTCATGACCATTCACAAG
AGTAAAGGTCTGGAGTTTCCTTATGTCTTTATCCTCAATATGGATCAGGACTTCAATAAGCAAGACTCGATGTCAGACGT
CATTCTCAGCCGTCAAAATGGGCTTGGTGTCAAATACATTGCCAAGGTGGAAACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATCAAACTCTCCATTCCCAGCCTTACCTATACGCAGAATGAAGAAGAACTGCAATTGGCTAGCTACTCAGAGCAG
ATGCGTCTGCTGTATGTTGCCATGACGCGAGCCGAGAGAAAGCTTTATCTTGTCGGTAAGGGCTCTCGTGAAAAGCTAGA
AGCTAAGGAATACCCAGCAGCAAATAACGGAAAATTAGATAGCAATACCAGACTGCAAGCCAGAAATTTCCAAGATTGGA
TCTGGGCTATTAGCAAAGTATTTGCCAAGGACAATCTCAACTTTAGCTATCGTTTTGTTGGTGAAGACCAGCTGACCAGA
GAAGCTATCGGAGAATTGGAAAACAAGAGTCCTCTACAAGATAGCTCTCAAGCAGACAACCGCCAGTCAGAAACCATCAA
AGAGGCTTTGGAAATGCTGAAAGAGGTGGAAGTTTATAATACTCTTCACCGCGCAGCCATTGAACTATCAAGTGTTCAAA
CCCCAAGCCAAATCAAGAAATTCTACGAACCCGTTATGGATATGGAAGGGGTACAAATTGCTAACCAAACTCAATCACCG
GAAAAGCAAATCAGCTTTGATTTACCAGATTTTTCAACTAAAGAAAAGGTAACTGGAGCGGAGATTGGTAGTGCAACCCA
CGAACTGATGCAGAGAATTGACCTCAGTCAGCAACCAACACTTGCTAGTCTGGCAGAAACTCTCAAACAAGTTCAGACTA
GTCCAGCTGTTAGAGACAAAATCAATCTTTCTAAAATCCTAGCTTTCTTTGACACATCACTTGGTCAGGAGATTCTTGGT
AATACCAGCCATCTTTATCGCGAGCAACCTTTCTCCATGCTCAAACGCGACCAAAAGAGTCAGGAAGACTTTGTTGTTCG
TGGAATCTTGGATGGCTATCTTCTTTATAAGGATCGTATCGTTCTTTTCGACTACAAAACAGACCGTTACGACGAACCAA
GTCAACTCATAGACCGTTATCGTGGCCAGTTAGCGCTATACGGAGAGGCTTTATCACGAGCCTATTCTATTAAAAATATT
GAAAAATACTTGATCTTACTTGGCAAAGACGAGGTTCAAGTTGTAAAAGTATAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

91.865

100

0.919