Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   I6H72_RS09380 Genome accession   NZ_CP066055
Coordinates   1846408..1847004 (+) Length   198 a.a.
NCBI ID   WP_198457931.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1841408..1852004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS09350 (I6H72_09350) - 1841580..1841855 (+) 276 WP_006268376.1 terminase small subunit -
  I6H72_RS09355 (I6H72_09355) - 1841921..1842286 (+) 366 WP_006268450.1 type II toxin-antitoxin system RelE/ParE family toxin -
  I6H72_RS09360 (I6H72_09360) HI0659 1842276..1842572 (+) 297 WP_020997975.1 helix-turn-helix domain-containing protein Machinery gene
  I6H72_RS09365 (I6H72_09365) - 1842594..1843799 (+) 1206 WP_020997974.1 hypothetical protein -
  I6H72_RS09370 (I6H72_09370) - 1843806..1843973 (+) 168 WP_006268192.1 hypothetical protein -
  I6H72_RS09375 (I6H72_09375) pbp2b 1844337..1846397 (+) 2061 WP_198457930.1 penicillin-binding protein PBP2B -
  I6H72_RS09380 (I6H72_09380) recR 1846408..1847004 (+) 597 WP_198457931.1 recombination mediator RecR Machinery gene
  I6H72_RS09385 (I6H72_09385) - 1847137..1848183 (+) 1047 WP_198457932.1 D-alanine--D-alanine ligase -
  I6H72_RS09390 (I6H72_09390) - 1848446..1849816 (+) 1371 WP_006268529.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  I6H72_RS09395 (I6H72_09395) - 1849806..1850353 (+) 548 Protein_1828 DUF1697 domain-containing protein -
  I6H72_RS09400 (I6H72_09400) - 1850360..1851064 (+) 705 WP_198457933.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21648.73 Da        Isoelectric Point: 4.3503

>NTDB_id=453385 I6H72_RS09380 WP_198457931.1 1846408..1847004(+) (recR) [Streptococcus constellatus strain FDAARGOS_1015]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDDPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYHGLYHVLQGLISPMNGIGPDDINLKSLITRLMNSEVTEVIVATNATADGEVTSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=453385 I6H72_RS09380 WP_198457931.1 1846408..1847004(+) (recR) [Streptococcus constellatus strain FDAARGOS_1015]
ATGCTTTATCCAACACCGATTGCAAAATTGATTGATAGCTTTTCAAAATTACCAGGAATTGGCATAAAAACAGCAACGCG
TTTGGCGTTTTATACCATTGGTATGAGTGATGATGATGTCAATGAATTTGCTAAAAATTTGCTTGCAGCAAAACGTGAGC
TGACCTATTGTTCTATTTGTGGTAATCTAACGGATGATGATCCTTGTGCTATCTGCACCGATGAGACACGGGATCAATCT
ACTATTTTGGTTGTAGAAGATAGCCGAGATGTATCTGCTATGGAAAATATTCAAGAATACCATGGTTTGTACCATGTTTT
GCAGGGATTGATTTCTCCTATGAATGGTATTGGACCAGACGACATCAATCTGAAAAGTCTCATTACACGGTTGATGAATA
GTGAGGTAACAGAGGTAATTGTGGCAACCAATGCGACAGCGGACGGGGAAGTAACTTCCATGTATATCTCACGGGTGTTA
AAACCAGCTGGTATCAAGGTAACGCGCCTGGCTCGTGGATTAGCAGTTGGTTCTGATATTGAATATGCAGACGAAGTGAC
GCTGCTTCGGGCTATTGAGAATCGCACAGAATTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

90.909

100

0.909
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475