Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HUF98_RS10410 Genome accession   NZ_CP054560
Coordinates   2153343..2153723 (-) Length   126 a.a.
NCBI ID   WP_000836912.1    Uniprot ID   A0AAP1R0C8
Organism   Acinetobacter baumannii strain YC103     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2148343..2158723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS10380 (HUF98_10330) tadA 2148462..2148965 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  HUF98_RS10385 (HUF98_10335) - 2148972..2150096 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  HUF98_RS10390 (HUF98_10340) ung 2150093..2150806 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  HUF98_RS10395 (HUF98_10345) - 2150857..2151453 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  HUF98_RS10400 (HUF98_10350) gspK 2151683..2152642 (-) 960 WP_140951666.1 type II secretion system minor pseudopilin GspK -
  HUF98_RS10405 (HUF98_10355) xcpW 2152642..2153343 (-) 702 WP_000594582.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HUF98_RS10410 (HUF98_10360) xcpV 2153343..2153723 (-) 381 WP_000836912.1 type II secretion system minor pseudopilin GspI Machinery gene
  HUF98_RS10415 (HUF98_10365) - 2153713..2154267 (-) 555 WP_075400334.1 type II secretion system protein -
  HUF98_RS10420 (HUF98_10370) - 2154277..2154885 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  HUF98_RS10425 (HUF98_10375) - 2154923..2155696 (-) 774 WP_000497298.1 TatD family hydrolase -
  HUF98_RS10430 (HUF98_10380) - 2155714..2156055 (-) 342 WP_001183025.1 PilZ domain-containing protein -
  HUF98_RS10435 (HUF98_10385) - 2156067..2157047 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  HUF98_RS10440 (HUF98_10390) kdsB 2157059..2157820 (-) 762 WP_140951667.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13965.16 Da        Isoelectric Point: 9.8004

>NTDB_id=453304 HUF98_RS10410 WP_000836912.1 2153343..2153723(-) (xcpV) [Acinetobacter baumannii strain YC103]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYSVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=453304 HUF98_RS10410 WP_000836912.1 2153343..2153723(-) (xcpV) [Acinetobacter baumannii strain YC103]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATTCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992