NTDB

Overview

Name	xcpW	Type	Machinery gene
Locus tag	HUF98_RS10405	Genome accession	NZ_CP054560
Coordinates	2152642..2153343 (-)	Length	233 a.a.
NCBI ID	WP_000594582.1	Uniprot ID	A0AAX0TJI0
Organism	Acinetobacter baumannii strain YC103
Function	pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2147642..2158343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUF98_RS10375 (HUF98_10325)	-	2147949..2148392 (-)	444	WP_001246675.1	SRPBCC family protein	-
HUF98_RS10380 (HUF98_10330)	tadA	2148462..2148965 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
HUF98_RS10385 (HUF98_10335)	-	2148972..2150096 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
HUF98_RS10390 (HUF98_10340)	ung	2150093..2150806 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
HUF98_RS10395 (HUF98_10345)	-	2150857..2151453 (-)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
HUF98_RS10400 (HUF98_10350)	gspK	2151683..2152642 (-)	960	WP_140951666.1	type II secretion system minor pseudopilin GspK	-
HUF98_RS10405 (HUF98_10355)	xcpW	2152642..2153343 (-)	702	WP_000594582.1	type II secretion system minor pseudopilin GspJ	Machinery gene
HUF98_RS10410 (HUF98_10360)	xcpV	2153343..2153723 (-)	381	WP_000836912.1	type II secretion system minor pseudopilin GspI	Machinery gene
HUF98_RS10415 (HUF98_10365)	-	2153713..2154267 (-)	555	WP_075400334.1	type II secretion system protein	-
HUF98_RS10420 (HUF98_10370)	-	2154277..2154885 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
HUF98_RS10425 (HUF98_10375)	-	2154923..2155696 (-)	774	WP_000497298.1	TatD family hydrolase	-
HUF98_RS10430 (HUF98_10380)	-	2155714..2156055 (-)	342	WP_001183025.1	PilZ domain-containing protein	-
HUF98_RS10435 (HUF98_10385)	-	2156067..2157047 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
HUF98_RS10440 (HUF98_10390)	kdsB	2157059..2157820 (-)	762	WP_140951667.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

Download Length: 233 a.a. Molecular weight: 26577.60 Da Isoelectric Point: 9.5501

                                >NTDB_id=453303 HUF98_RS10405 WP_000594582.1 2152642..2153343(-) (xcpW) [Acinetobacter baumannii strain YC103]

MIKNKYIHIRSIASRLAARSSSARLARASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ

ILRDTLQIIPLSANQGGQIHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS

STLLSQVDQYQIMVLTPQEVIKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

Download Length: 702 bp

                                >NTDB_id=453303 HUF98_RS10405 WP_000594582.1 2152642..2153343(-) (xcpW) [Acinetobacter baumannii strain YC103]

ATGATAAAAAATAAATATATTCACATCCGAAGCATTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAGCTCG

CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT

TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA

ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAAATTCATCCAGCTTTAGAAATCGATAA

TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC

GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG

AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCATAAAATGGCCCGAGGTTAA

TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT

ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987

Detailed information NTG0453303