Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   I6H72_RS03150 Genome accession   NZ_CP066055
Coordinates   628520..631795 (-) Length   1091 a.a.
NCBI ID   WP_198458279.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 623520..636795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS03145 (I6H72_03145) rexA 624843..628523 (-) 3681 WP_198458418.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6H72_RS03150 (I6H72_03150) rexB 628520..631795 (-) 3276 WP_198458279.1 ATP-dependent nuclease subunit B Machinery gene
  I6H72_RS03155 (I6H72_03155) - 631916..633130 (-) 1215 WP_006267100.1 ABC transporter permease -
  I6H72_RS03160 (I6H72_03160) - 633127..634020 (-) 894 WP_198458280.1 ABC transporter ATP-binding protein -
  I6H72_RS03165 (I6H72_03165) - 634216..634428 (-) 213 WP_003069777.1 YdbC family protein -
  I6H72_RS03170 (I6H72_03170) - 634515..634856 (+) 342 WP_037565830.1 hypothetical protein -
  I6H72_RS03175 (I6H72_03175) - 634869..635624 (-) 756 WP_198458281.1 ABC transporter ATP-binding protein -
  I6H72_RS03180 (I6H72_03180) - 635621..636487 (-) 867 WP_198458282.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 125660.72 Da        Isoelectric Point: 4.9916

>NTDB_id=453302 I6H72_RS03150 WP_198458279.1 628520..631795(-) (rexB) [Streptococcus constellatus strain FDAARGOS_1015]
MKLLYTDIRNPLTKILVKEAERLAQEGKRVFYIAPNSLSFEKERAVLALLENHASFAITVTRFAQMARYFILNDVQKGEN
IDDIGLSMLFYKVLSEMNEHDLRVYGGIRTDAQFIQQLVELYHELQVAQMSYTDLDYLEEAEKKADLIKIFQVVMYQLNQ
SEFTSDSNIMAFTHHIIAGDVDEELQDLVLVIDGFTRFSAEEAYLIELLHNKGVEIIIGAYASEKAYRASFREGNLYQAS
VDFLRQLAGKFEVKPEYIPASQPDDAFGNISKLLESRYDFSDVDLELTEQDRSHVQIWSTVNQKEELEYVAKSIRQLVHD
GVRYKDIRVLLGDVEAYHLQLKTIFDQYQIPFYLGRSEAMAHHPLVQFIEALVRLKHYNFRTEDLLNLLKTGLYGHLKQE
ELDLFEQYICFADVRGMSKFSKEFTHNQQRKFNLVHINQLRKNIVTPLLEFFKSRSQTATGLLQKFHQFLTTISFSQNFA
GLVDFTNPQDQERQEEVWKAFCHVLEQFANVFSASKVNLDDFLTLVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPF
VYAIGLTQDYFPKIAQNKTLLSDEDRLLLNEVTDEHSELLIAAQENLKKNRFVALSLLNAATDRLVLSTPQIVNEIENDI
SPYLLELREQPIALPIEVKHPQATSDDIGTYRALLARVIELNQGDIDKEHSLTEKEQTFWSVAVRVLRKKLESEGISIPN
VTSSLETETLSEQTLQILYPPHQAFLLSTSALTEFYRNQYAYFLKYILALQEEMTIYPDARSHGNFLHRVFEKVVHDQSN
EQFDIRLEKAIQEVSCEPEFEALYTESAKALFAHEVLLDAAHATGRVLERNDLVETIQEEAVFGQESAEFLTLSDGRNLQ
IRGKVDRIDRLRSNDSLGIVDYKSSDTDFDFQKFFNGLNSQLPTYLMALKQEKWTSDEAQVFGAMYLQMTNPLVPLAKTK
SQSDAVKEVMKTLEYKGLFLSEQAYQLNDLYNKKKVNLLSQEELETLLAYNALLYRRAAEHILTGHFKINPYTENGKSIA
PFVEQYKSITGFEANLHLSSARHLVKLEGKNSTGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=453302 I6H72_RS03150 WP_198458279.1 628520..631795(-) (rexB) [Streptococcus constellatus strain FDAARGOS_1015]
ATGAAATTACTTTATACAGATATTCGCAATCCCTTAACGAAGATTTTGGTGAAAGAAGCAGAACGCTTGGCACAGGAAGG
TAAGCGCGTGTTTTATATTGCACCTAATTCTCTTTCATTTGAAAAGGAGAGAGCTGTTTTGGCTCTTTTAGAAAACCATG
CTTCCTTTGCTATTACAGTGACACGTTTTGCGCAGATGGCACGTTATTTTATCCTCAATGATGTGCAAAAGGGAGAAAAC
ATAGATGATATTGGGCTTAGCATGCTCTTTTATAAAGTGCTTTCAGAAATGAATGAGCATGATTTGAGGGTGTATGGTGG
CATTCGGACGGATGCACAATTTATTCAGCAATTGGTTGAGCTCTATCATGAACTGCAAGTCGCTCAGATGAGTTATACAG
ACCTAGACTATTTGGAAGAAGCAGAGAAAAAAGCAGATTTAATCAAGATTTTTCAAGTAGTGATGTATCAGCTTAATCAG
AGTGAATTTACTTCTGATTCAAATATCATGGCCTTTACCCATCATATTATAGCAGGTGATGTGGATGAGGAACTGCAGGA
TTTAGTCTTGGTTATTGATGGGTTTACGCGCTTTTCGGCTGAGGAAGCTTATTTGATCGAGCTTTTGCATAATAAGGGTG
TGGAAATTATCATCGGTGCTTATGCAAGTGAAAAAGCGTATCGTGCAAGTTTTCGAGAGGGCAATCTTTATCAGGCGAGT
GTTGATTTCTTGCGACAGTTGGCAGGTAAATTTGAAGTGAAACCTGAATATATACCAGCAAGCCAGCCAGATGATGCATT
TGGAAATATTTCAAAACTGTTAGAAAGTCGGTATGATTTCTCAGATGTTGACCTAGAGTTAACGGAGCAGGATCGCTCGC
ATGTGCAGATTTGGTCAACAGTCAATCAAAAGGAAGAATTAGAATATGTAGCAAAAAGCATTCGTCAGTTAGTTCATGAT
GGAGTTCGTTATAAGGATATTCGCGTTCTTTTGGGAGATGTGGAAGCGTATCATTTACAATTAAAGACGATTTTTGATCA
GTATCAAATCCCTTTTTATCTGGGACGAAGTGAGGCTATGGCCCATCACCCTTTGGTGCAATTTATTGAAGCTTTAGTGC
GCCTAAAACACTACAATTTTCGAACGGAAGATTTGCTCAATCTCTTAAAAACAGGTCTTTATGGTCATTTAAAGCAAGAA
GAACTAGACTTGTTTGAGCAATATATCTGCTTTGCAGACGTGAGAGGAATGAGTAAGTTTTCTAAAGAATTTACTCATAA
TCAACAACGAAAATTTAATCTAGTTCATATCAATCAATTAAGAAAAAATATAGTCACTCCTCTCTTGGAATTTTTTAAAT
CTCGCAGTCAAACAGCGACAGGCCTGCTTCAAAAATTTCATCAATTTTTAACAACAATTTCTTTTTCTCAGAATTTTGCT
GGTTTAGTAGATTTTACGAATCCGCAAGATCAAGAACGGCAAGAAGAAGTTTGGAAAGCTTTTTGCCATGTTTTGGAACA
ATTTGCCAATGTCTTTTCAGCTAGCAAAGTCAATCTAGATGATTTTCTGACTCTGGTGCAGTCAGGAATGCTGTTATCTA
ATTATCGAACGATTCCAGCAACAGTAGACGTTGTGACCGTTCAGTCTTATGACTTGATTGAGCCGTTGTCAAGTCCTTTT
GTTTACGCGATTGGTTTGACCCAAGACTATTTTCCCAAAATTGCACAAAATAAGACTCTTTTGTCAGATGAAGACCGTTT
GTTGCTAAACGAAGTGACAGATGAGCATTCGGAATTGCTGATTGCTGCTCAGGAAAATCTCAAGAAAAATCGTTTTGTCG
CCTTGTCACTTCTAAATGCTGCAACGGATAGATTGGTACTTTCCACTCCTCAGATTGTCAATGAAATAGAGAATGACATT
TCTCCATATCTGTTGGAACTGCGTGAGCAACCAATTGCTTTGCCAATTGAGGTGAAGCATCCGCAGGCAACAAGTGATGA
TATTGGTACTTATCGTGCTTTATTGGCGAGGGTTATTGAGTTGAATCAAGGAGATATTGATAAAGAGCATTCTTTGACTG
AGAAAGAACAGACTTTTTGGTCAGTAGCTGTACGAGTTTTGCGCAAAAAATTGGAAAGTGAAGGCATTTCGATTCCGAAT
GTCACGTCAAGTCTTGAGACAGAAACCTTGTCAGAGCAGACTTTGCAAATCCTTTATCCGCCTCATCAAGCATTTCTATT
GTCGACTTCAGCTTTGACAGAATTTTATCGTAATCAGTATGCTTATTTTTTGAAGTATATTTTGGCTCTGCAAGAAGAAA
TGACAATTTACCCAGATGCGCGCAGTCATGGAAATTTTCTGCACCGTGTGTTTGAAAAAGTCGTGCACGATCAATCGAAC
GAGCAATTCGACATCCGTCTAGAAAAAGCCATTCAGGAAGTAAGCTGTGAACCGGAGTTTGAAGCTCTTTATACCGAAAG
TGCCAAAGCATTGTTTGCTCATGAAGTTTTGCTTGACGCAGCGCATGCGACAGGGCGTGTTCTAGAAAGAAATGATTTAG
TAGAAACTATTCAGGAAGAGGCTGTTTTTGGGCAAGAGAGTGCAGAATTTTTAACCTTATCAGATGGTCGCAATCTTCAA
ATTCGAGGAAAAGTTGACCGCATTGACCGATTGAGAAGTAATGACAGTCTGGGAATTGTGGATTATAAATCAAGTGACAC
AGATTTTGATTTTCAAAAATTTTTCAATGGTTTGAATTCTCAATTACCTACGTATCTAATGGCATTGAAACAAGAAAAGT
GGACGAGTGATGAAGCACAGGTTTTTGGCGCCATGTATTTGCAGATGACCAATCCACTCGTACCTTTAGCGAAGACCAAG
TCGCAGAGTGATGCAGTCAAAGAGGTGATGAAAACGTTAGAATACAAGGGACTATTTCTATCGGAGCAAGCTTATCAGCT
CAATGATTTGTATAATAAAAAGAAAGTCAATTTATTAAGTCAAGAAGAGCTAGAAACTTTGTTAGCTTATAATGCACTCT
TGTACCGTCGTGCTGCCGAGCATATATTGACAGGGCATTTTAAGATTAATCCTTATACAGAAAATGGCAAAAGTATTGCA
CCTTTTGTGGAACAATATAAGTCCATTACAGGTTTTGAAGCCAATCTTCATCTTTCTAGTGCCCGACATTTAGTGAAATT
AGAAGGTAAGAACTCAACGGGTGAGAAGAAGCGTCAAGCATGGATAGAAAAGATGAAGGAGGAGTTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

54.71

100

0.554