Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HUF98_RS02030 Genome accession   NZ_CP054560
Coordinates   430037..430672 (-) Length   211 a.a.
NCBI ID   WP_071225762.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425037..435672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS01995 (HUF98_01995) mlaE 425373..426149 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  HUF98_RS02000 (HUF98_02000) - 426149..426829 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  HUF98_RS02005 (HUF98_02005) - 426856..427497 (+) 642 WP_001093907.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  HUF98_RS02010 (HUF98_02010) - 427509..427796 (+) 288 WP_000250997.1 STAS domain-containing protein -
  HUF98_RS02015 (HUF98_02015) - 427866..428879 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  HUF98_RS02020 (HUF98_02020) - 429037..429618 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  HUF98_RS02025 (HUF98_02025) - 429633..430034 (+) 402 WP_140951712.1 NUDIX hydrolase -
  HUF98_RS02030 (HUF98_02030) comF 430037..430672 (-) 636 WP_071225762.1 ComF family protein Machinery gene
  HUF98_RS02035 (HUF98_02035) recG 430665..432710 (-) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  HUF98_RS02040 (HUF98_02040) - 432731..433546 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  HUF98_RS02045 (HUF98_02045) adeT2 433626..434612 (+) 987 WP_000712908.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24590.76 Da        Isoelectric Point: 9.5740

>NTDB_id=453295 HUF98_RS02030 WP_071225762.1 430037..430672(-) (comF) [Acinetobacter baumannii strain YC103]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALCQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=453295 HUF98_RS02030 WP_071225762.1 430037..430672(-) (comF) [Acinetobacter baumannii strain YC103]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTATG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981