Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I6I32_RS06185 Genome accession   NZ_CP066041
Coordinates   1271231..1274056 (+) Length   941 a.a.
NCBI ID   WP_198464312.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1266231..1279056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS06150 (I6I32_06150) ruvA 1266276..1266869 (+) 594 WP_000273401.1 Holliday junction branch migration protein RuvA Machinery gene
  I6I32_RS06155 (I6I32_06155) - 1266879..1267445 (+) 567 WP_001126061.1 DNA-3-methyladenine glycosylase I -
  I6I32_RS06160 (I6I32_06160) - 1267526..1267789 (-) 264 WP_000166112.1 SemiSWEET family transporter -
  I6I32_RS06165 (I6I32_06165) - 1267895..1268929 (-) 1035 WP_198464309.1 S66 peptidase family protein -
  I6I32_RS06170 (I6I32_06170) - 1269097..1269444 (-) 348 WP_198464310.1 TfoX/Sxy family protein -
  I6I32_RS06175 (I6I32_06175) - 1269460..1270137 (-) 678 WP_198464311.1 DUF1129 domain-containing protein -
  I6I32_RS06180 (I6I32_06180) - 1270149..1271093 (-) 945 WP_000815620.1 magnesium transporter CorA family protein -
  I6I32_RS06185 (I6I32_06185) uvrA 1271231..1274056 (+) 2826 WP_198464312.1 excinuclease ABC subunit UvrA Machinery gene
  I6I32_RS06190 (I6I32_06190) - 1274094..1274849 (-) 756 WP_001043931.1 hypothetical protein -
  I6I32_RS06195 (I6I32_06195) - 1274997..1276058 (+) 1062 WP_000952764.1 M24 family metallopeptidase -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103882.93 Da        Isoelectric Point: 6.3162

>NTDB_id=453249 I6I32_RS06185 WP_198464312.1 1271231..1274056(+) (uvrA) [Streptococcus oralis strain FDAARGOS_1075]
MQDKIVIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMEKPDVDAIDGL
SPAISIDQKTTSKNPRSTVGTTTEINDYLRLLYARVGTPYCINGHGAIKASSVEQIVDKVLELPERQRLQILAPVIRKKK
GQHKSVIEKIQKDGYVRVRVDGEVYDVTEVPELSKSKQHNIDVVVDRIVIKEGIRSRLFDSIEAALRIAEGYVIIDTMDD
SELLFSEHYACPVCGFTVPELEPRLFSFNAPFGSCSECDGLGIKLEVDVDLVVPDTSKTLREGALAPWNPISSNYYPNML
EQAMTAFGVDMDKPFEDLSEEDKNLILYGSDGKEFHFHYENEFGGVRDIDIPFEGVVNNIKRRYHETNSDYTRTQMRLYM
NELTCGTCHGYRLNDQALSVRVGGEQGPHIGEISDLSIADHLELVSQLTLSENEAIIARPILKEIKDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADYLI
DVGPGAGVFGGEIVAAGTPKQVARNSKSITGQYLSGKRAIPVPEERRAGNGRFIEVTGARENNLQNITARFPLGKFIAVT
GVSGSGKSTLINSILKKAIAQKLNRNSDKPGKFKTITGIEHVDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVACEVCHGTRYNSETLEVHYKEKNISQVLDMTVNDAVEFF
QHIPKIQRKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSFYILDEPTTGLHTEDIARLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGTIIATGTPEEVAANEASYTGHYLKGKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=453249 I6I32_RS06185 WP_198464312.1 1271231..1274056(+) (uvrA) [Streptococcus oralis strain FDAARGOS_1075]
ATGCAAGATAAAATTGTGATTCATGGGGCTCGTGCCCATAACTTAAAAAATATCGATGTGGAAATTCCAAGAGACAAGCT
GGTTGTCGTGACTGGTTTGTCAGGTTCTGGGAAATCCAGTCTAGCCTTCGATACCCTCTATGCGGAGGGACAACGTCGCT
ATGTAGAGAGCTTGTCAGCCTACGCTCGTCAGTTCTTGGGCAACATGGAAAAGCCTGATGTAGATGCCATTGATGGCCTC
AGTCCAGCTATTTCCATCGACCAAAAAACGACCAGCAAAAATCCTCGTTCGACCGTTGGGACAACAACTGAAATCAATGA
CTATCTGCGTCTCCTCTACGCACGTGTGGGGACGCCTTACTGTATCAACGGGCATGGGGCAATCAAGGCTTCTTCTGTGG
AGCAAATTGTTGATAAGGTCTTGGAATTGCCAGAACGCCAACGTCTGCAAATCTTAGCTCCTGTCATTCGTAAGAAAAAA
GGGCAACACAAGAGCGTCATTGAAAAGATTCAGAAAGACGGTTATGTCCGCGTCCGTGTGGATGGGGAAGTTTATGATGT
GACCGAAGTGCCAGAGTTGTCGAAGAGCAAGCAACACAATATCGATGTCGTGGTCGACCGTATTGTCATCAAGGAGGGTA
TTCGTAGCCGTCTCTTTGACTCCATAGAGGCTGCCCTTCGTATCGCAGAAGGTTATGTCATTATCGACACTATGGACGAT
TCTGAGTTGCTCTTCTCTGAGCATTATGCCTGCCCGGTTTGTGGTTTTACCGTACCAGAGTTAGAGCCACGTCTCTTCTC
CTTCAATGCTCCTTTTGGATCTTGTAGTGAGTGTGACGGTTTGGGTATCAAGTTGGAGGTGGATGTTGACTTGGTGGTTC
CTGATACCAGCAAAACTTTGCGTGAGGGAGCCTTGGCACCTTGGAATCCTATCTCATCCAACTACTATCCAAACATGCTA
GAACAAGCTATGACAGCCTTTGGAGTGGATATGGATAAGCCATTTGAAGACTTGTCAGAAGAAGATAAAAACTTGATTCT
TTACGGGTCTGATGGCAAGGAATTCCATTTCCACTATGAAAATGAATTTGGCGGTGTGCGCGATATTGACATTCCTTTTG
AGGGAGTTGTCAATAATATCAAGCGTCGTTACCATGAGACTAACAGTGACTACACCCGTACCCAGATGCGACTCTACATG
AATGAGCTGACTTGTGGAACCTGTCATGGCTATCGTCTCAACGATCAGGCCTTGTCTGTCCGTGTGGGTGGTGAGCAAGG
ACCACATATTGGTGAAATCTCAGATCTGTCTATCGCAGACCACTTGGAGTTGGTGAGCCAGCTGACCTTGTCTGAAAATG
AAGCGATTATCGCCCGTCCCATTCTCAAGGAAATCAAGGATCGATTGACCTTCCTCAATAACGTAGGTCTTAACTATCTG
ACCCTGTCACGTTCGGCAGGAACCCTATCAGGTGGAGAGAGTCAGCGTATTCGCTTGGCAACCCAGATTGGGTCCAATTT
ATCAGGTGTCCTTTATATCCTGGATGAGCCGTCGATTGGTCTTCACCAGAGGGATAATGACCGCCTGATTGCTAGTCTGA
AAAAGATGCGTGACTTGGGCAATACTCTCATCGTGGTGGAACACGACGAAGATACCATGCGCGAGGCGGATTATCTGATT
GACGTTGGTCCAGGTGCCGGTGTTTTTGGTGGCGAGATTGTTGCTGCAGGAACACCCAAGCAGGTGGCCCGTAATAGTAA
GTCTATTACAGGCCAGTACTTGTCAGGTAAACGTGCCATTCCAGTACCAGAAGAGCGCCGTGCCGGAAATGGTCGCTTTA
TCGAAGTGACAGGTGCGCGTGAGAACAACTTGCAAAATATCACTGCTCGCTTCCCATTAGGAAAATTCATCGCGGTGACA
GGTGTGTCAGGTTCAGGGAAATCGACCTTAATCAACAGCATCCTCAAAAAAGCTATTGCTCAAAAACTCAACCGTAATTC
AGACAAGCCTGGTAAATTCAAAACCATCACAGGGATTGAACATGTAGACCGCTTGATTGACATTGACCAGAGCCCTATCG
GACGGACGCCGAGGTCCAACCCAGCTACCTATACGGGAGTTTTTGACGATATACGTGACCTCTTTGCTCAGACAAACGAA
GCTAAGATTCGAGGCTATAAGAAGGGCCGCTTCAGTTTCAATGTCAAGGGTGGTCGTTGCGAAGCCTGCTCAGGTGACGG
GATTATCAAGATCGAGATGCACTTCTTGCCAGATGTTTACGTGGCTTGTGAAGTCTGCCACGGGACTCGCTATAACAGTG
AAACCCTAGAAGTCCACTATAAGGAAAAGAATATCTCGCAGGTCTTGGACATGACCGTCAACGATGCGGTGGAATTCTTC
CAACACATTCCCAAGATTCAACGCAAACTTCAGACCATCAAGGATGTGGGGCTGGGCTATGTAACGCTAGGGCAACCGGC
TACCACCCTTTCTGGAGGAGAAGCCCAGCGTATGAAGTTAGCTAGTGAGCTCCACAAACGCTCGACAGGAAAATCTTTCT
ACATTCTGGATGAGCCAACGACAGGTCTTCATACAGAGGACATCGCTCGCTTGCTTAAAGTCTTGGCTCGCTTTGTCGAC
GATGGCAATACAGTCCTCGTCATTGAGCACAATCTGGATGTCATCAAGACGGCAGACCATATCATCGATTTGGGACCTGA
GGGCGGTGTCGGTGGTGGAACCATCATCGCAACAGGAACTCCAGAAGAAGTAGCGGCCAATGAAGCCAGCTACACAGGAC
ACTATTTGAAAGGAAAGTTAAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

98.298

99.894

0.982
  uvrA Streptococcus pneumoniae TIGR4

98.298

99.894

0.982
  uvrA Streptococcus pneumoniae D39

98.298

99.894

0.982