Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HT750_RS00475 Genome accession   NZ_CP054556
Coordinates   97023..97652 (+) Length   209 a.a.
NCBI ID   WP_000839133.1    Uniprot ID   A0A1M2IUY6
Organism   Escherichia coli strain LWY24     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 92023..102652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT750_RS00455 (HT750_00455) ycbZ 92411..94171 (-) 1761 WP_000156477.1 Lon protease family protein -
  HT750_RS00460 (HT750_00460) matP 94357..94809 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HT750_RS00465 (HT750_00465) ompA 94887..95939 (-) 1053 WP_001346420.1 porin OmpA -
  HT750_RS00470 (HT750_00470) sulA 96296..96805 (-) 510 WP_000288691.1 SOS-induced cell division inhibitor SulA -
  HT750_RS00475 (HT750_00475) sxy/tfoX 97023..97652 (+) 630 WP_000839133.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HT750_RS00480 (HT750_00480) yccS 97615..99777 (-) 2163 WP_000875039.1 YccS family putative transporter -
  HT750_RS00485 (HT750_00485) yccF 99787..100233 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HT750_RS00490 (HT750_00490) helD 100356..102410 (+) 2055 WP_001361412.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24161.04 Da        Isoelectric Point: 9.2180

>NTDB_id=453232 HT750_RS00475 WP_000839133.1 97023..97652(+) (sxy/tfoX) [Escherichia coli strain LWY24]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTIDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=453232 HT750_RS00475 WP_000839133.1 97023..97652(+) (sxy/tfoX) [Escherichia coli strain LWY24]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCATTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAC
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M2IUY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995