Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   I6I16_RS12395 Genome accession   NZ_CP066032
Coordinates   2546290..2547027 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDAARGOS_1059     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2541290..2552027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I16_RS12360 (I6I16_12360) - 2542212..2543321 (+) 1110 WP_000132785.1 phage late control D family protein -
  I6I16_RS12365 (I6I16_12365) - 2543364..2543624 (+) 261 WP_000488107.1 ogr/Delta-like zinc finger family protein -
  I6I16_RS12370 (I6I16_12370) - 2543814..2543954 (+) 141 WP_000078920.1 Hok/Gef family protein -
  I6I16_RS12375 (I6I16_12375) - 2544090..2544386 (+) 297 WP_001519189.1 TM2 domain-containing protein -
  I6I16_RS12380 (I6I16_12380) - 2544579..2544776 (+) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  I6I16_RS12385 (I6I16_12385) - 2544721..2545527 (+) 807 WP_000215756.1 site-specific DNA-methyltransferase -
  I6I16_RS12390 (I6I16_12390) raiA 2545678..2546019 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  I6I16_RS12395 (I6I16_12395) comL 2546290..2547027 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  I6I16_RS12400 (I6I16_12400) rluD 2547162..2548142 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  I6I16_RS12405 (I6I16_12405) yfiH 2548139..2548870 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  I6I16_RS12410 (I6I16_12410) clpC 2549000..2551573 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=453136 I6I16_RS12395 WP_000197686.1 2546290..2547027(-) (comL) [Escherichia coli strain FDAARGOS_1059]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=453136 I6I16_RS12395 WP_000197686.1 2546290..2547027(-) (comL) [Escherichia coli strain FDAARGOS_1059]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376