NTDB

Overview

Name	recF	Type	Machinery gene
Locus tag	I6H77_RS04255	Genome accession	NZ_CP066021
Coordinates	867676..868767 (-)	Length	363 a.a.
NCBI ID	WP_000266691.1	Uniprot ID	-
Organism	Streptococcus oralis strain FDAARGOS_1020
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 862676..873767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H77_RS04240 (I6H77_04240)	-	863133..864755 (-)	1623	WP_000958789.1	ATP-binding cassette domain-containing protein	-
I6H77_RS04245 (I6H77_04245)	trpS	864951..865979 (+)	1029	WP_000165452.1	tryptophan--tRNA ligase	-
I6H77_RS04250 (I6H77_04250)	guaB	866139..867617 (+)	1479	WP_000073416.1	IMP dehydrogenase	-
I6H77_RS04255 (I6H77_04255)	recF	867676..868767 (-)	1092	WP_000266691.1	DNA replication/repair protein RecF	Machinery gene
I6H77_RS04260 (I6H77_04260)	yaaA	868770..869138 (-)	369	WP_000455876.1	S4 domain-containing protein YaaA	-
I6H77_RS04265 (I6H77_04265)	yfmF	869299..870549 (+)	1251	WP_000424568.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
I6H77_RS04270 (I6H77_04270)	yfmH	870546..871829 (+)	1284	WP_000170121.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
I6H77_RS04275 (I6H77_04275)	rodZ	871865..872686 (+)	822	WP_001227974.1	cytoskeleton protein RodZ	-
I6H77_RS04280 (I6H77_04280)	pgsA	872697..873242 (+)	546	WP_000712147.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

Download Length: 363 a.a. Molecular weight: 41725.87 Da Isoelectric Point: 9.2959

                                >NTDB_id=452994 I6H77_RS04255 WP_000266691.1 867676..868767(-) (recF) [Streptococcus oralis strain FDAARGOS_1020]

MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIHFDNEQLHLSGLLQKKTSS

IPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQR

NTYLKSSQKIDETFLSVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNFTDDEQLTNSFKI

ALEKSRSRDLFKKNTGVGPHRDDIAFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITNESPILLLDDVMSELDNTRQ

LKLLETISQSIQTFITTTSLDHLQNLPENLSIFNIQNGKISVN

Nucleotide

Download Length: 1092 bp

                                >NTDB_id=452994 I6H77_RS04255 WP_000266691.1 867676..868767(-) (recF) [Streptococcus oralis strain FDAARGOS_1020]

ATGTGGCTCCAACATTTAACAATTAAAACCTTTCGAAACTACAAAGAGGCAAAAATTGATTTCAATCCAAAATTAAATGT

CTTTCTAGGTCAAAATGCACAAGGAAAAACCAATATTCTAGAAGCAATCTATTTTTTAGCCTTAACACGTAGTCATCGGA

CTCGTACAGATAAAAATCTCATTCATTTTGATAACGAGCAACTCCATCTTTCTGGCTTGCTACAGAAGAAAACAAGCTCT

ATCCCTCTAGAAATTGATTTAACGCCAAAAGGGCGTGTGACTAAGGTCAATCACTTAAAACAAGCGCGCCTATCAGACTA

CATCGGACATATGAATGTTGTCCTCTTCGCACCTGAAGATCTCCAGCTAATTAAGGGAGCACCTTCTGTCCGTCGAAAAT

TTATAGACATCGAACTGGGACAAATTAAACCAATCTACTTGTCAGACTTGTCAAACTACAACCATATACTCAAGCAGAGA

AATACCTACCTAAAATCTAGTCAGAAGATTGATGAAACATTTCTGTCAGTATTAGATGATCAGTTAGTAGAGTATGGTTG

TCGCGTCATAAAGCATCGGATAAAATTCATTAAAGACTTAGAGAAATTTGGTCAAAAAAAACACTTAGAAATTTCAAATA

AATTAGAAGAGTTGTCAATATCTTATCAATCATCTGTCAACTTCACTGATGACGAACAGCTAACAAATTCTTTTAAAATT

GCTTTGGAGAAAAGCAGATCCAGAGACTTATTTAAAAAGAATACTGGAGTTGGCCCTCATCGAGATGACATTGCTTTTTA

TATCAATGGAATGGATGCTAGTTTTGGAAGCCAAGGTCAACATCGTAGTCTTGTACTTTCTATCAAACTAGCAGAGATTG

AGCTAATGGAAAGTATTACCAACGAGTCTCCGATACTACTGCTTGATGATGTTATGAGTGAACTTGACAATACACGGCAA

CTAAAATTACTAGAAACCATCTCTCAATCTATCCAAACCTTTATTACAACAACAAGTTTAGACCACTTACAAAACTTACC

AGAAAATCTTAGTATTTTCAACATCCAAAACGGTAAAATTTCTGTAAATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recF	Streptococcus pneumoniae R6	89.532	100	0.895
recF	Bacillus subtilis subsp. subtilis str. 168	46.196	100	0.468

Detailed information NTG0452994