Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HUE57_RS00260 Genome accession   NZ_CP054491
Coordinates   51658..52050 (-) Length   130 a.a.
NCBI ID   WP_078482375.1    Uniprot ID   A0A6N0HRK1
Organism   Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 46658..57050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUE57_RS00230 (HUE57_00230) - 46821..47027 (+) 207 WP_174672502.1 hypothetical protein -
  HUE57_RS00235 (HUE57_00235) - 47052..47564 (-) 513 WP_174672503.1 Hpt domain-containing protein -
  HUE57_RS00240 (HUE57_00240) - 47561..48472 (-) 912 WP_078482371.1 CheR family methyltransferase -
  HUE57_RS00245 (HUE57_00245) - 48493..50574 (-) 2082 WP_078482372.1 methyl-accepting chemotaxis protein -
  HUE57_RS00250 (HUE57_00250) - 50670..51215 (-) 546 WP_078482373.1 chemotaxis protein CheW -
  HUE57_RS00255 (HUE57_00255) - 51226..51588 (-) 363 WP_078482374.1 response regulator -
  HUE57_RS00260 (HUE57_00260) pilG 51658..52050 (-) 393 WP_078482375.1 twitching motility response regulator PilG Regulator
  HUE57_RS00265 (HUE57_00265) gshB 52303..53268 (+) 966 WP_078482376.1 glutathione synthase -
  HUE57_RS00270 (HUE57_00270) - 53284..54267 (+) 984 WP_078482377.1 energy transducer TonB -
  HUE57_RS00275 (HUE57_00275) - 54310..54879 (+) 570 WP_078482378.1 YqgE/AlgH family protein -
  HUE57_RS00280 (HUE57_00280) ruvX 54897..55376 (+) 480 WP_078482420.1 Holliday junction resolvase RuvX -
  HUE57_RS00285 (HUE57_00285) pyrR 55373..55876 (+) 504 WP_269087622.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HUE57_RS00290 (HUE57_00290) - 55873..56850 (+) 978 WP_078482379.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14469.92 Da        Isoelectric Point: 9.0850

>NTDB_id=452859 HUE57_RS00260 WP_078482375.1 51658..52050(-) (pilG) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
MKNDFASMKVMVMVIDDSKTIRRTAETLLKKEGCEVITATDGFEALAKIADSRPDIIFVDIMMPRLDGYQTCALIKNNNA
FKGTPVIMLSSKDGLFDKARGKIVGSEQYLTKPFTKNELLDAIRSHVHKG

Nucleotide


Download         Length: 393 bp        

>NTDB_id=452859 HUE57_RS00260 WP_078482375.1 51658..52050(-) (pilG) [Candidatus Reidiella endopervernicosa isolate Santa_Monica_outfall]
ATGAAAAATGATTTCGCCAGCATGAAGGTGATGGTGATGGTGATCGACGATAGTAAGACGATTCGTCGTACCGCAGAAAC
CCTGCTCAAGAAAGAGGGGTGCGAGGTAATTACCGCCACCGATGGCTTTGAGGCGCTGGCTAAAATTGCCGATAGTCGCC
CCGATATTATCTTTGTCGACATTATGATGCCGCGTCTCGACGGTTATCAGACCTGTGCGCTAATCAAAAACAATAACGCC
TTTAAGGGCACGCCGGTGATCATGCTCTCCAGCAAGGATGGGCTGTTTGACAAGGCGCGCGGCAAGATTGTCGGTTCCGA
ACAGTATCTGACCAAGCCCTTCACCAAAAACGAATTGCTGGACGCTATCCGGAGTCACGTACACAAAGGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0HRK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.016

97.692

0.723
  vicR Streptococcus mutans UA159

40.678

90.769

0.369