Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HT586_RS12260 Genome accession   NZ_CP054482
Coordinates   2346007..2346537 (-) Length   176 a.a.
NCBI ID   WP_111746572.1    Uniprot ID   A0A328A2G8
Organism   Macrococcoides bohemicum strain 19Msa422     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2341007..2351537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT586_RS12235 (HT586_12215) - 2341379..2342431 (+) 1053 WP_238999250.1 YsnF/AvaK domain-containing protein -
  HT586_RS12240 (HT586_12220) - 2342554..2343162 (+) 609 WP_203545896.1 GNAT family N-acetyltransferase -
  HT586_RS12245 (HT586_12225) - 2343438..2344637 (-) 1200 WP_280636240.1 IS110 family transposase -
  HT586_RS12250 (HT586_12230) - 2344954..2345502 (-) 549 WP_203545897.1 YfbU family protein -
  HT586_RS12255 (HT586_12235) rpsR 2345731..2345973 (-) 243 WP_096077771.1 30S ribosomal protein S18 -
  HT586_RS12260 (HT586_12240) ssbA 2346007..2346537 (-) 531 WP_111746572.1 single-stranded DNA-binding protein Machinery gene
  HT586_RS12265 (HT586_12245) rpsF 2346562..2346852 (-) 291 WP_096077769.1 30S ribosomal protein S6 -
  HT586_RS12270 (HT586_12250) - 2346976..2347299 (-) 324 WP_096077768.1 hypothetical protein -
  HT586_RS12275 (HT586_12255) ychF 2347321..2348421 (-) 1101 WP_096077767.1 redox-regulated ATPase YchF -
  HT586_RS12280 (HT586_12260) - 2348434..2348625 (-) 192 WP_096077766.1 DUF951 domain-containing protein -
  HT586_RS12285 (HT586_12265) - 2348615..2349502 (-) 888 WP_379875277.1 mechanosensitive ion channel family protein -
  HT586_RS12290 (HT586_12270) - 2349512..2350360 (-) 849 WP_203545898.1 ParB/RepB/Spo0J family partition protein -
  HT586_RS12295 (HT586_12275) - 2350353..2351114 (-) 762 WP_096077764.1 ParA family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19564.11 Da        Isoelectric Point: 4.7065

>NTDB_id=452849 HT586_RS12260 WP_111746572.1 2346007..2346537(-) (ssbA) [Macrococcoides bohemicum strain 19Msa422]
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLNKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVICDSVQFLEPKNANQNRSNNDPSQDYSSYDQGDYGQQSQGQNYQSNHNNNNQQQSNASAPSTNPF
ANATGPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=452849 HT586_RS12260 WP_111746572.1 2346007..2346537(-) (ssbA) [Macrococcoides bohemicum strain 19Msa422]
TTGCTTAACCGAGTTGTATTAGTAGGTCGTTTAACAAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTAGC
TACATTTACATTAGCAGTTAATCGCACATTTACAAATGCTCAAGGAGAGAGACAAGCTGATTTTATCAACTGTGTCGTTT
TCCGTAAACAAGCAGAAAATGTGAATAACTTCTTAAACAAAGGTAGTTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGCCGTAGAGTATATGTAACGGAAGTAATTTGTGATTCAGTACAGTTCTTAGAACCGAAGAA
TGCAAATCAAAATCGTTCGAATAATGACCCGAGTCAAGACTATTCAAGTTATGATCAAGGTGATTATGGACAACAATCTC
AAGGTCAAAATTATCAATCAAATCATAATAACAACAATCAACAACAGTCTAATGCATCAGCACCATCAACGAATCCATTT
GCAAATGCAACTGGTCCGATTGATATCAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A328A2G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.614
  ssb Latilactobacillus sakei subsp. sakei 23K

52.406

100

0.557