Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   HT132_RS14955 Genome accession   NZ_CP054479
Coordinates   3062737..3063690 (-) Length   317 a.a.
NCBI ID   WP_174532619.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3057737..3068690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS14925 (HT132_14925) - 3057890..3058876 (-) 987 WP_025284553.1 ABC transporter ATP-binding protein -
  HT132_RS14930 (HT132_14930) - 3059050..3059835 (-) 786 WP_017417447.1 DUF2268 domain-containing protein -
  HT132_RS14935 (HT132_14935) fabF 3059919..3061157 (-) 1239 WP_025649581.1 beta-ketoacyl-ACP synthase II -
  HT132_RS14940 (HT132_14940) - 3061180..3062118 (-) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  HT132_RS14945 (HT132_14945) - 3062286..3062504 (+) 219 WP_007409123.1 hypothetical protein -
  HT132_RS14950 (HT132_14950) comZ 3062533..3062724 (-) 192 WP_003155061.1 ComZ family protein Regulator
  HT132_RS14955 (HT132_14955) med 3062737..3063690 (-) 954 WP_174532619.1 BMP family ABC transporter substrate-binding protein Regulator
  HT132_RS14960 (HT132_14960) - 3063781..3064347 (-) 567 WP_110124641.1 hypothetical protein -
  HT132_RS14965 (HT132_14965) - 3064430..3065164 (-) 735 WP_174532620.1 hypothetical protein -
  HT132_RS14970 (HT132_14970) - 3065425..3065610 (+) 186 WP_007409129.1 YjzD family protein -
  HT132_RS14975 (HT132_14975) - 3065647..3065826 (-) 180 WP_003155070.1 YjzC family protein -
  HT132_RS14980 (HT132_14980) argF 3065901..3066872 (-) 972 WP_095060854.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35309.92 Da        Isoelectric Point: 4.6686

>NTDB_id=452799 HT132_RS14955 WP_174532619.1 3062737..3063690(-) (med) [Bacillus amyloliquefaciens strain R8-25]
MITRLVMTFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSELNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKNNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=452799 HT132_RS14955 WP_174532619.1 3062737..3063690(-) (med) [Bacillus amyloliquefaciens strain R8-25]
TTGATCACCAGGCTTGTCATGACCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAACTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAAACAATGAGGTCGGCGTCATCGCCTCTTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGAGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAACAGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

77.918

100

0.779