Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   I6H76_RS02350 Genome accession   NZ_CP065994
Coordinates   460736..464362 (-) Length   1208 a.a.
NCBI ID   WP_006532347.1    Uniprot ID   A0ABM9XDD9
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 455736..469362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS02325 (I6H76_02325) miaA 456795..457694 (-) 900 WP_006532353.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  I6H76_RS02330 (I6H76_02330) - 457881..458057 (+) 177 WP_006532352.1 DUF3042 family protein -
  I6H76_RS02335 (I6H76_02335) - 458107..458841 (-) 735 WP_006532351.1 PHP domain-containing protein -
  I6H76_RS02340 (I6H76_02340) - 458861..459304 (-) 444 Protein_471 cytidine deaminase family protein -
  I6H76_RS02345 (I6H76_02345) - 459488..460633 (+) 1146 WP_006532348.1 cobalamin-independent methionine synthase II family protein -
  I6H76_RS02350 (I6H76_02350) rexA 460736..464362 (-) 3627 WP_006532347.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6H76_RS02355 (I6H76_02355) rexB 464352..467594 (-) 3243 WP_006532346.1 ATP-dependent nuclease subunit B Machinery gene
  I6H76_RS02360 (I6H76_02360) - 467747..468301 (+) 555 WP_232617589.1 transposase -

Sequence

Protein


Download         Length: 1208 a.a.        Molecular weight: 138481.49 Da        Isoelectric Point: 5.1019

>NTDB_id=452771 I6H76_RS02350 WP_006532347.1 460736..464362(-) (rexA) [Streptococcus infantarius strain FDAARGOS_1019]
MTFKPFLTAEAISSLQQKEAQSSKAQKRTPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGITVDRLFISTFT
VKAAGELKERLEKKISQALQKATDNDLKTYLNEQLLALQTADIGTMDAFTQKLVNQYGYTLGISPTFRIMTDKSEQDLVK
NDVFADLFADYMTGQNQDSFRKLVRNFSGNRKDSSAFRGIVYKIYDFSQATDNPKKWLAEVFLKGARTYTDFSAIPDQEV
MDFLACMHETANQLQDVTDLEDYKQVTAKGTPTANYKKHLNMIEHLHEWAMHFETLYGHDGLGRLAADVADLIPSGPAVT
VAGVKYPVFKTLQERLTGLKHLETIFKYQSESLPLLELLQAFMQDFSEQYLQAKIQENAFEFSDIAHFAIQILEENPDIR
ELYQDKYHEVMVDEYQDNNHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEHGKLILLKENFR
SQSEVLDATNSVFTHLMDESVGEILYDGMHQLVAGSPAQKEAHPENKTQVLIYDTDDSSELASSPEEEQINPNEVKLVAK
EIIRLHNEEGVAFEDITLLVSSRTRNDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLNDYALVALMRS
PMFSFNEDDLARLALQTNEDETRANLYQKLEHALANQGQHAELVTPALRQKLKVFMTCFSKWRDFAKWHSLYDLIWKIYN
ERFYYDYVGNLPRAEQRQANLYALALRANNFEKTGFKGLSRFIRMIDRVLESENDLADVEVALPKHTVNLMTIHKSKGLE
FKYVFILNIDKKFSIQDMMSPLILSRQNGAGIKYLADMREELDTDVFPTVKVSMDTLPYQLNKRELRLATLSEQMRLFYV
AMTRAEKKLYLVGKGSSEKLVDKYSGKSENNHLPVAEREAFMTFQDWMLAIHEAYKNLPFKVKFVTDEDLTEEKIGQIEV
KSAIKPDDLSNNRQSENIAEALERLEAVEELNAKYQSAINLPSLRTPSQVKKLYEPVMDTDGVDVMAKTDHVKPSFALPD
FSKKAKVEATAIGSAMHELMQRIFLSQKVTLEDISTALAQVSAEDEVKARIRLENVLDFFENSTLGQLIQQNTDKIYREA
PFAMLKEDPESKEKFVVRGIVDAYLLLEDRLVLLDYKTDKYTNSEEIKDRYQGQMALYAEALSKSYHIDQVDKYLVLLGG
ERLEVVKL

Nucleotide


Download         Length: 3627 bp        

>NTDB_id=452771 I6H76_RS02350 WP_006532347.1 460736..464362(-) (rexA) [Streptococcus infantarius strain FDAARGOS_1019]
ATGACCTTTAAACCATTTTTAACGGCTGAAGCTATTTCTTCTCTACAGCAAAAAGAGGCTCAGTCATCTAAAGCGCAAAA
ACGAACACCTGAACAAATCGAAGCCATTTATAGCTATGGCAACAATATTTTGGTATCAGCGTCGGCTGGTTCTGGAAAAA
CTTTCGTTATGGTTGAGCGCATTATTGATAAGATTTTGCGTGGCATTACCGTTGACCGGCTCTTTATTTCGACCTTTACG
GTTAAAGCAGCGGGAGAATTAAAGGAACGTCTTGAGAAAAAAATCAGCCAAGCTTTGCAAAAAGCGACGGATAATGATTT
AAAAACTTATCTTAACGAACAGTTGTTAGCCTTGCAGACTGCTGATATTGGAACCATGGATGCCTTTACGCAAAAATTAG
TTAACCAATATGGCTACACGTTGGGAATTTCACCTACTTTTCGTATTATGACGGATAAGAGTGAACAAGACCTTGTCAAG
AATGACGTTTTTGCAGACCTTTTTGCTGATTACATGACGGGGCAAAATCAAGATAGTTTCCGCAAATTAGTTCGTAATTT
TTCAGGTAATCGCAAGGACAGTTCAGCTTTTAGAGGAATTGTTTACAAAATCTATGATTTCAGTCAAGCAACGGATAATC
CTAAGAAATGGCTGGCTGAGGTTTTCTTGAAAGGTGCTAGAACCTATACTGATTTTTCCGCCATTCCCGACCAAGAAGTT
ATGGATTTTCTAGCTTGCATGCATGAAACAGCTAATCAATTACAAGATGTGACGGACTTAGAGGATTATAAGCAGGTTAC
AGCTAAGGGGACACCTACTGCCAATTATAAAAAACACTTGAATATGATTGAGCATTTGCATGAATGGGCCATGCATTTTG
AGACGCTTTATGGTCATGATGGTCTTGGTCGTTTGGCTGCTGACGTAGCTGATTTAATTCCGTCAGGTCCAGCAGTGACT
GTGGCAGGAGTGAAATATCCCGTTTTTAAAACTCTTCAGGAACGTTTGACTGGATTGAAGCATTTAGAAACTATCTTCAA
ATACCAATCGGAAAGTCTGCCTTTGTTAGAACTTTTACAAGCATTTATGCAGGATTTTTCTGAGCAATATTTGCAAGCTA
AAATCCAAGAAAATGCTTTTGAGTTTTCAGATATCGCGCATTTTGCTATCCAGATTTTGGAAGAAAATCCAGATATTCGT
GAGCTCTACCAAGATAAATACCACGAAGTCATGGTCGATGAGTACCAAGATAATAACCACACGCAAGAACGTATGCTGGA
ATTATTATCAAATGGTCATAATCGTTTCATGGTGGGGGATATTAAGCAATCGATTTATCGTTTTCGTCAGGCTGATCCGC
AGATTTTTAACCAAAAATTCAAGGATTTTCAAGAGCATCCAGAACATGGAAAATTAATTTTGCTAAAAGAAAACTTCCGT
AGTCAATCAGAAGTTCTAGATGCGACAAATAGCGTCTTTACGCATTTGATGGACGAGTCTGTTGGGGAAATTTTGTATGA
TGGCATGCACCAGTTGGTGGCAGGTAGTCCTGCACAAAAAGAAGCTCATCCAGAAAATAAAACACAAGTTCTAATTTACG
ACACTGATGACAGTAGTGAACTTGCAAGTAGTCCAGAAGAGGAGCAAATCAATCCGAACGAGGTTAAGCTGGTAGCTAAA
GAAATCATTCGTTTGCATAATGAGGAAGGCGTTGCCTTTGAAGATATCACCTTATTAGTATCATCACGTACGCGTAATGA
TGGCATTTTACAGACCTTTGAGCATTATGGTATTCCTTTGGTAACTGATGGCGGTGAGCAAAATTACCTCAAATCAGTTG
AAGTAATGGTGATGCTTGATACGCTTAGAGCCTTGGATAATCCGCTCAATGACTATGCTTTGGTAGCTCTTATGCGTTCA
CCAATGTTTTCTTTTAACGAAGATGACCTTGCTCGTCTTGCTCTTCAAACCAATGAAGATGAGACTAGAGCTAATCTTTA
CCAAAAACTAGAACATGCTTTGGCTAATCAAGGGCAACATGCAGAGCTAGTCACACCAGCTTTACGTCAAAAATTAAAAG
TTTTTATGACTTGCTTTAGCAAGTGGCGTGATTTTGCCAAATGGCATTCGCTTTATGATTTGATTTGGAAGATTTATAAT
GAGCGTTTCTATTATGATTACGTGGGTAATCTTCCCCGTGCCGAGCAGCGTCAAGCCAATCTTTACGCCCTTGCCCTTCG
TGCTAATAATTTTGAAAAGACCGGCTTTAAAGGCTTATCACGTTTTATTCGCATGATTGATCGTGTCTTAGAAAGCGAAA
ATGATTTGGCTGACGTTGAAGTGGCTCTTCCAAAACATACTGTGAATTTGATGACTATCCACAAGAGTAAGGGACTTGAA
TTTAAGTATGTCTTCATTTTGAATATTGACAAGAAATTCAGTATTCAAGACATGATGTCACCGTTAATCTTGTCACGTCA
AAATGGAGCAGGAATTAAATATTTGGCTGACATGCGAGAAGAGTTAGATACGGATGTTTTTCCAACTGTTAAAGTCAGCA
TGGACACTTTGCCTTATCAGCTTAATAAACGTGAACTGAGACTAGCAACCTTATCTGAACAAATGCGTTTGTTCTATGTT
GCCATGACCCGTGCTGAGAAGAAATTGTATCTAGTTGGAAAAGGAAGTTCTGAAAAATTGGTTGATAAATACAGCGGTAA
GTCTGAAAATAATCACCTTCCAGTTGCAGAACGAGAGGCTTTCATGACTTTCCAAGATTGGATGTTAGCCATTCACGAAG
CATATAAAAACTTGCCATTTAAAGTCAAATTTGTCACAGATGAAGACCTGACAGAAGAAAAAATCGGTCAGATCGAAGTC
AAATCAGCTATTAAACCTGATGATTTGTCAAATAACCGTCAGTCTGAAAATATCGCAGAAGCTTTGGAGAGACTTGAGGC
AGTTGAAGAGTTGAATGCCAAATATCAATCAGCCATTAACTTACCAAGCTTAAGAACACCTAGTCAGGTCAAGAAACTTT
ATGAGCCTGTCATGGATACTGATGGTGTTGATGTGATGGCTAAGACTGACCACGTAAAACCAAGCTTTGCCTTACCTGAT
TTTTCGAAAAAAGCTAAAGTCGAAGCAACAGCGATTGGTTCTGCCATGCATGAGCTCATGCAGCGAATTTTCTTGTCTCA
AAAAGTGACACTAGAGGATATTTCGACAGCTCTAGCACAAGTTTCAGCTGAAGATGAGGTTAAAGCGCGCATTCGTCTAG
AAAATGTTTTGGATTTCTTTGAAAATTCAACTCTTGGACAATTGATTCAGCAAAATACTGACAAAATCTACCGCGAAGCT
CCATTTGCCATGCTAAAAGAAGACCCTGAGAGCAAAGAAAAATTCGTTGTTCGTGGGATTGTCGATGCTTATCTTCTTTT
AGAGGATCGTTTGGTTCTTTTAGATTACAAGACTGATAAATACACAAACAGCGAGGAAATCAAAGACCGATACCAAGGCC
AAATGGCACTTTATGCCGAAGCACTTAGCAAGTCGTATCATATTGATCAAGTTGATAAATACCTTGTTTTACTTGGTGGA
GAGCGTCTGGAAGTAGTTAAACTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1044-1185)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-891)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.755

100

0.539