Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   I6H76_RS01025 Genome accession   NZ_CP065994
Coordinates   203168..204238 (-) Length   356 a.a.
NCBI ID   WP_014334723.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 198168..209238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS01005 (I6H76_01005) - 198622..200598 (+) 1977 WP_043878368.1 FtsX-like permease family protein -
  I6H76_RS01010 (I6H76_01010) braR 200700..201362 (+) 663 WP_006532126.1 response regulator transcription factor Regulator
  I6H76_RS01015 (I6H76_01015) - 201359..202306 (+) 948 WP_006532125.1 HAMP domain-containing sensor histidine kinase -
  I6H76_RS01020 (I6H76_01020) - 202390..203070 (+) 681 WP_006532124.1 XRE family transcriptional regulator -
  I6H76_RS01025 (I6H76_01025) xerS 203168..204238 (-) 1071 WP_014334723.1 tyrosine recombinase XerS Machinery gene
  I6H76_RS10345 - 204845..205006 (-) 162 WP_081442281.1 ATP-binding cassette domain-containing protein -
  I6H76_RS01035 (I6H76_01035) - 204983..205783 (+) 801 WP_006532121.1 AraC family transcriptional regulator -
  I6H76_RS01040 (I6H76_01040) - 205943..207028 (-) 1086 WP_006532120.1 iron-containing alcohol dehydrogenase family protein -
  I6H76_RS01045 (I6H76_01045) ffh 207308..208867 (-) 1560 WP_006532119.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41342.44 Da        Isoelectric Point: 9.6571

>NTDB_id=452763 I6H76_RS01025 WP_014334723.1 203168..204238(-) (xerS) [Streptococcus infantarius strain FDAARGOS_1019]
MKREKLLEKIDELKNIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWILDSGISNANQITDIELGTLEHLSKKDME
SFVLYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFKYLTEEVEDENGDPYFYRNVMKKISTKKKKETLAARAENIKGK
LFLGDETMAFIEYIDKEYQNKLSHRALSSFQKNKERDLAIISLLLASGVRLSEAVNLDLKDLHLNMMVIEITRKGGKRDS
VNVAAFAKPYLEDYLKIRAPRYKAEKQDQALFLTEYRGVPNRIDASSIEKLVAKYSQDFKVRVTPHKLRHTLATRLYGAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=452763 I6H76_RS01025 WP_014334723.1 203168..204238(-) (xerS) [Streptococcus infantarius strain FDAARGOS_1019]
ATGAAACGAGAAAAATTACTTGAAAAAATTGATGAACTAAAAAATATAATGCCTTGGTATGTCCTTGACTATTACCAATC
AAAACTTTCTGTACCATATAGTTTTACAACCTTGTATGAATACCTCAAGGAATATCGACGATTTTTTGAATGGATTCTTG
ATTCAGGTATTTCAAATGCTAATCAGATTACTGATATTGAATTAGGTACTTTAGAACATTTGTCAAAAAAAGATATGGAA
TCTTTCGTACTTTATCTGCGTGAACGTCCTTCTTTAAACACCTATTCAACCAAGCAAGGAGTTTCACAAACCACTATCAA
CCGCACTCTCTCAGCACTTTCAAGCTTATTTAAGTATCTGACAGAAGAGGTCGAGGACGAAAATGGTGACCCCTACTTCT
ATCGAAATGTCATGAAAAAGATTTCAACCAAGAAAAAGAAGGAAACCTTGGCAGCTCGGGCTGAAAATATTAAAGGGAAG
CTTTTTTTAGGCGATGAGACCATGGCATTTATCGAATACATCGATAAGGAATACCAAAACAAGCTCTCACACCGCGCTCT
CTCCTCCTTTCAGAAGAACAAGGAGCGTGATTTAGCGATTATTTCACTTCTTCTTGCATCTGGTGTTCGTCTTTCTGAGG
CTGTTAATCTTGATTTGAAGGATTTACATCTGAATATGATGGTTATCGAAATCACTCGTAAAGGTGGCAAACGCGATTCT
GTGAATGTTGCTGCTTTTGCCAAACCTTATCTTGAAGACTATTTAAAAATTCGTGCACCTCGTTATAAAGCAGAAAAACA
AGATCAAGCACTATTTTTAACAGAATACCGTGGTGTTCCAAATCGTATCGATGCTTCAAGTATTGAAAAATTGGTTGCCA
AGTATTCGCAAGATTTTAAGGTTCGTGTGACTCCCCACAAACTTCGTCACACATTAGCAACGAGACTGTATGGCGCAACT
AAATCACAAGTTTTGGTTAGTCACCAATTAGGGCATGCCAGCACTCAGGTTACTGACTTGTATACCCATATCGTTAATGA
TGAACAAAAAAATGCGCTTGATAAATTGTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829