Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HT051_RS09780 Genome accession   NZ_CP054476
Coordinates   2063862..2064332 (-) Length   156 a.a.
NCBI ID   WP_174541858.1    Uniprot ID   A0A6N0DS33
Organism   Methyloligella sp. GL2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2058862..2069332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT051_RS09760 (HT051_09760) - 2060193..2060690 (+) 498 WP_174541854.1 PRC-barrel domain-containing protein -
  HT051_RS09765 (HT051_09765) - 2060823..2061785 (+) 963 WP_174541855.1 cation diffusion facilitator family transporter -
  HT051_RS09770 (HT051_09770) - 2061880..2062512 (+) 633 WP_174541856.1 YceI family protein -
  HT051_RS09775 (HT051_09775) - 2062520..2063692 (-) 1173 WP_174541857.1 acyltransferase -
  HT051_RS09780 (HT051_09780) ssb 2063862..2064332 (-) 471 WP_174541858.1 single-stranded DNA-binding protein Machinery gene
  HT051_RS09785 (HT051_09785) - 2064831..2065451 (+) 621 WP_174541859.1 MAPEG family protein -
  HT051_RS09790 (HT051_09790) - 2065669..2066238 (-) 570 WP_174541860.1 DUF2585 domain-containing protein -
  HT051_RS09795 (HT051_09795) - 2066692..2068245 (+) 1554 WP_174541861.1 ATP-dependent RecD-like DNA helicase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17114.90 Da        Isoelectric Point: 5.0012

>NTDB_id=452734 HT051_RS09780 WP_174541858.1 2063862..2064332(-) (ssb) [Methyloligella sp. GL2]
MAGSVNKVILIGNLGADPEIRQTQDGRPIANLRVATTDSWRDKSTGERRERTEWHRVVIFNEGLCRIAEQYLRKGSKVYL
EGQLQTRKWQDQSGQDRYTTEVVLQGFNSSLTMLDGRQGGGGMSDTPDSGGSFGQTSALGGGGGSFDKELDDEIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=452734 HT051_RS09780 WP_174541858.1 2063862..2064332(-) (ssb) [Methyloligella sp. GL2]
ATGGCCGGATCGGTCAATAAAGTCATTCTGATCGGCAATCTGGGTGCCGATCCCGAAATCCGCCAAACCCAGGACGGGCG
GCCTATTGCCAATCTGCGCGTCGCCACCACCGATAGCTGGCGGGACAAGTCGACCGGCGAGCGGCGCGAGCGCACCGAAT
GGCACCGCGTTGTGATCTTCAATGAAGGGCTCTGCCGTATCGCCGAGCAGTATCTGCGCAAGGGCTCCAAGGTTTATCTG
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGATCAGTCGGGGCAGGACCGCTACACCACCGAGGTGGTGCTGCAGGGCTT
CAACTCGTCTCTGACCATGCTGGATGGCCGCCAGGGCGGCGGCGGCATGAGCGATACGCCCGATTCCGGCGGCTCGTTCG
GCCAGACCAGCGCGCTCGGCGGGGGCGGCGGCTCGTTCGACAAAGAGCTGGATGACGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0DS33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.559

87.179

0.519
  ssb Glaesserella parasuis strain SC1401

62.81

77.564

0.487