Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6I21_RS06435 Genome accession   NZ_CP065984
Coordinates   1291360..1291953 (+) Length   197 a.a.
NCBI ID   WP_014570853.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_1064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1286360..1296953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I21_RS06425 (I6I21_06425) - 1288453..1289148 (+) 696 WP_003131997.1 hypothetical protein -
  I6I21_RS06430 (I6I21_06430) hexB 1289277..1291247 (+) 1971 WP_014570854.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6I21_RS06435 (I6I21_06435) ruvA 1291360..1291953 (+) 594 WP_014570853.1 Holliday junction branch migration protein RuvA Machinery gene
  I6I21_RS06440 (I6I21_06440) ruvB 1292080..1293081 (+) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  I6I21_RS06445 (I6I21_06445) - 1293218..1294102 (+) 885 WP_003131993.1 XRE/MutR family transcriptional regulator -
  I6I21_RS06450 (I6I21_06450) - 1294322..1294612 (+) 291 WP_003131992.1 hypothetical protein -
  I6I21_RS06455 (I6I21_06455) - 1294679..1295863 (+) 1185 WP_014570851.1 ABC transporter permease -
  I6I21_RS06460 (I6I21_06460) - 1295860..1296477 (+) 618 WP_003131990.1 AAA family ATPase -
  I6I21_RS06465 (I6I21_06465) - 1296582..1296746 (+) 165 WP_003131988.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21148.69 Da        Isoelectric Point: 5.8174

>NTDB_id=452641 I6I21_RS06435 WP_014570853.1 1291360..1291953(+) (ruvA) [Lactococcus lactis strain FDAARGOS_1064]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAIQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=452641 I6I21_RS06435 WP_014570853.1 1291360..1291953(+) (ruvA) [Lactococcus lactis strain FDAARGOS_1064]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCAGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATACAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462