Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   HSZ52_RS09135 Genome accession   NZ_CP054440
Coordinates   1857228..1857794 (-) Length   188 a.a.
NCBI ID   WP_011303464.1    Uniprot ID   Q49WF9
Organism   Staphylococcus saprophyticus strain UTI-058y     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1852228..1862794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ52_RS09100 (HSZ52_09100) - 1852446..1853798 (-) 1353 WP_011303459.1 isochorismate synthase -
  HSZ52_RS09105 (HSZ52_09105) - 1853987..1854925 (+) 939 WP_011303460.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  HSZ52_RS09110 (HSZ52_09110) - 1855036..1855593 (-) 558 WP_011303461.1 GNAT family N-acetyltransferase -
  HSZ52_RS09115 (HSZ52_09115) - 1855761..1855973 (+) 213 WP_011303462.1 TM2 domain-containing protein -
  HSZ52_RS13215 - 1856093..1856182 (+) 90 WP_011303463.1 SAR1012 family small protein -
  HSZ52_RS09120 (HSZ52_09120) - 1856269..1856697 (-) 429 WP_002483731.1 organic hydroperoxide resistance protein -
  HSZ52_RS09135 (HSZ52_09135) comK/comK1 1857228..1857794 (-) 567 WP_011303464.1 competence protein ComK Regulator
  HSZ52_RS09140 (HSZ52_09140) - 1858046..1858264 (+) 219 WP_011303465.1 IDEAL domain-containing protein -
  HSZ52_RS09145 (HSZ52_09145) - 1858346..1859335 (-) 990 WP_002483734.1 lipoate--protein ligase -
  HSZ52_RS09150 (HSZ52_09150) - 1859536..1859721 (+) 186 WP_002483735.1 DUF2187 family protein -
  HSZ52_RS09155 (HSZ52_09155) - 1859727..1860329 (+) 603 WP_002483736.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  HSZ52_RS09160 (HSZ52_09160) - 1860920..1862428 (-) 1509 WP_011303467.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 22095.50 Da        Isoelectric Point: 9.5132

>NTDB_id=452540 HSZ52_RS09135 WP_011303464.1 1857228..1857794(-) (comK/comK1) [Staphylococcus saprophyticus strain UTI-058y]
MIQPYIIKKGDMVLQPCSLSTGKYEGSYLLKYKDDSKVLKERVPKIIDRSCRFYGSSYNFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVHQIKPLKEKKCKVTFVDNQTIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKPQLNIYEALAKYSLFENKS

Nucleotide


Download         Length: 567 bp        

>NTDB_id=452540 HSZ52_RS09135 WP_011303464.1 1857228..1857794(-) (comK/comK1) [Staphylococcus saprophyticus strain UTI-058y]
ATGATTCAACCCTATATCATTAAAAAAGGGGATATGGTTTTACAACCATGCAGTTTATCAACTGGTAAGTATGAAGGTAG
TTATCTTTTAAAGTATAAGGATGACAGCAAAGTTCTAAAAGAACGTGTTCCAAAGATTATTGATCGATCGTGTAGATTTT
ATGGTAGTAGTTATAATTTTAAGAAAGAAGATACGATGAGAATTACTGGCATAAGCAGTAAACCCCCAATTTTATTTACT
CCACTTTTTCCTACTTATTTTTTCCCAACGCACTCTGATAGAAAAGAAGAAAATACTTGGATTAATATTCATTATGTTCA
CCAAATCAAACCACTAAAAGAAAAGAAATGTAAAGTGACATTTGTAGATAATCAAACAATTGTAGCTAACATTTCAGCAC
ATAGCATGCATCATCAATACCTAAATGGTATTTATTATTACTATATGATGGATAGGGCAGCAAGAGTTGCTACCTTTGAT
CCAGAATCTCCTATTGATTATACAAAACCTCAATTAAATATTTATGAAGCATTAGCAAAATATTCATTATTTGAAAATAA
ATCATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q49WF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

54.891

97.872

0.537
  comK/comK1 Staphylococcus aureus N315

54.891

97.872

0.537