Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   HSZ52_RS06400 Genome accession   NZ_CP054440
Coordinates   1286225..1286536 (+) Length   103 a.a.
NCBI ID   WP_011303023.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-058y     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1281225..1291536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ52_RS06370 (HSZ52_06370) - 1281963..1282160 (+) 198 WP_037538382.1 YqgQ family protein -
  HSZ52_RS06375 (HSZ52_06375) - 1282164..1283150 (+) 987 WP_011303019.1 glucokinase -
  HSZ52_RS06380 (HSZ52_06380) - 1283150..1283476 (+) 327 WP_002483185.1 MTH1187 family thiamine-binding protein -
  HSZ52_RS06385 (HSZ52_06385) - 1283476..1284099 (+) 624 WP_011303020.1 MBL fold metallo-hydrolase -
  HSZ52_RS06390 (HSZ52_06390) comGA 1284187..1285161 (+) 975 WP_011303021.1 competence type IV pilus ATPase ComGA Machinery gene
  HSZ52_RS06395 (HSZ52_06395) comGB 1285133..1286197 (+) 1065 WP_061050599.1 competence type IV pilus assembly protein ComGB -
  HSZ52_RS06400 (HSZ52_06400) comGC 1286225..1286536 (+) 312 WP_011303023.1 competence type IV pilus major pilin ComGC Machinery gene
  HSZ52_RS06405 (HSZ52_06405) comGD 1286517..1286972 (+) 456 WP_225791589.1 competence type IV pilus minor pilin ComGD -
  HSZ52_RS06410 (HSZ52_06410) comGF 1287230..1287673 (+) 444 WP_011303025.1 competence type IV pilus minor pilin ComGF -
  HSZ52_RS06415 (HSZ52_06415) - 1287877..1288350 (+) 474 WP_002483192.1 shikimate kinase -
  HSZ52_RS06420 (HSZ52_06420) gcvT 1288534..1289625 (+) 1092 WP_011303027.1 glycine cleavage system aminomethyltransferase GcvT -
  HSZ52_RS06425 (HSZ52_06425) gcvPA 1289643..1290995 (+) 1353 WP_047503899.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11372.45 Da        Isoelectric Point: 9.1187

>NTDB_id=452534 HSZ52_RS06400 WP_011303023.1 1286225..1286536(+) (comGC) [Staphylococcus saprophyticus strain UTI-058y]
MKKLKINRNAFTLIEMLLVLLIISLLLILIIPNIAKQSSHLQNTGCEAQLKMIDSQIEAYALKFNKKPSSIEDLVTEGYI
KENQKSCKSGAAITINNGEAVAN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=452534 HSZ52_RS06400 WP_011303023.1 1286225..1286536(+) (comGC) [Staphylococcus saprophyticus strain UTI-058y]
ATGAAAAAACTAAAAATTAATAGAAATGCTTTTACATTAATAGAAATGTTACTTGTATTATTAATAATTAGCTTATTATT
AATATTAATTATACCCAATATAGCTAAACAATCGTCTCATTTGCAAAATACTGGATGTGAGGCACAACTTAAAATGATTG
ATAGCCAAATTGAAGCGTATGCTTTAAAGTTTAATAAAAAGCCATCGTCTATAGAAGACTTAGTTACAGAAGGATACATT
AAAGAAAATCAAAAGTCATGTAAATCTGGTGCAGCCATCACTATTAACAATGGTGAAGCTGTTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

78.723

91.262

0.718
  comGC Staphylococcus aureus MW2

78.723

91.262

0.718
  comYC Streptococcus gordonii str. Challis substr. CH1

42.857

100

0.437
  comYC Streptococcus mutans UA159

48.837

83.495

0.408
  comYC Streptococcus mutans UA140

48.837

83.495

0.408
  comGC/cglC Streptococcus mitis NCTC 12261

39.806

100

0.398
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

91.262

0.379
  comYC Streptococcus suis isolate S10

44.706

82.524

0.369
  comGC/cglC Streptococcus mitis SK321

45.238

81.553

0.369